PDB entry 1za3
View 1za3 on RCSB PDB site
Description: The crystal structure of the YSd1 Fab bound to DR5
Class: immune system/signaling protein
Keywords: phage display, protein engineering, combinatorial mutagenesis, antibody library, death receptor-5
Deposited on
2005-04-05, released
2005-06-14
The last revision prior to the SCOP 1.73 freeze date was dated
2005-06-14, with a file datestamp of
2007-06-28.
Experiment type: XRAY
Resolution: 3.35 Å
R-factor: 0.23
AEROSPACI score: 0.16
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Fab-YSd1 light chain
Species: synthetic, synthetic
Domains in SCOP 1.73: d1za3a1, d1za3a2 - Chain 'B':
Compound: Fab-YSd1 heavy chain
Species: synthetic, synthetic
Domains in SCOP 1.73: d1za3b1, d1za3b2 - Chain 'H':
Compound: Fab-YSd1 heavy chain
Species: synthetic, synthetic
Domains in SCOP 1.73: d1za3h1, d1za3h2 - Chain 'L':
Compound: Fab-YSd1 light chain
Species: synthetic, synthetic
Domains in SCOP 1.73: d1za3l1, d1za3l2 - Chain 'R':
Compound: Tumor necrosis factor receptor superfamily member 10B
Species: HOMO SAPIENS
Gene: DR5
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1za3r1, d1za3r2, d1za3r3 - Chain 'S':
Compound: Tumor necrosis factor receptor superfamily member 10B
Species: HOMO SAPIENS
Gene: DR5
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1za3s1, d1za3s2, d1za3s3
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1za3A (A:)
diqmtqspsslsasvgdrvtitcrasqdvntavawyqqkpgkapklliyaasylysgvps
rfsgsgsgtdftltisslqpedfatyycqsssspytfgqgtkveikrtvaapsvfifpps
deqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltl
skadyekhkvyacevthqglsspvtksfnrgec
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1za3B (B:)
evqlvesggglvqpggslrlscaasgfsiysysihwvrqapgkglewvasispysgytsy
adsvkgrftisadtskntaylqmnslraedtavyycsryssyysyyyssssysyamdywg
qgtlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvh
tfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdkth
Sequence, based on observed residues (ATOM records): (download)
>1za3B (B:)
evqlvesggglvqpggslrlscaasgfsiysysihwvrqapgkglewvasispysgytsy
adsvkgrftisadtskntaylqmnslraedtavyycsryssyysyyyssssysyamdywg
qgtlvtvssastkgpsvfplapsgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavl
qssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk
- Chain 'H':
Sequence, based on SEQRES records: (download)
>1za3H (H:)
evqlvesggglvqpggslrlscaasgfsiysysihwvrqapgkglewvasispysgytsy
adsvkgrftisadtskntaylqmnslraedtavyycsryssyysyyyssssysyamdywg
qgtlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvh
tfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdkth
Sequence, based on observed residues (ATOM records): (download)
>1za3H (H:)
evqlvesggglvqpggslrlscaasgfsiysysihwvrqapgkglewvasispysgytsy
adsvkgrftisadtskntaylqmnslraedtavyycsryssyysyyyssssysyamdywg
qgtlvtvssastkgpsvfplapsgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavl
qssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>1za3L (L:)
diqmtqspsslsasvgdrvtitcrasqdvntavawyqqkpgkapklliyaasylysgvps
rfsgsgsgtdftltisslqpedfatyycqsssspytfgqgtkveikrtvaapsvfifpps
deqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltl
skadyekhkvyacevthqglsspvtksfnrgec
- Chain 'R':
Sequence, based on SEQRES records: (download)
>1za3R (R:)
gshmalitqqdlapqqraapqqkrsspseglcppghhisedgrdcisckygqdysthwnd
llfclrctrcdsgevelspctttrntvcqceegtfreedspemcrkcrtgcprgmvkvgd
ctpwsdiecvhkes
Sequence, based on observed residues (ATOM records): (download)
>1za3R (R:)
sspseglcppghhisedgrdcisckygqdysthwndllfclrctrcdsgevelspctttr
ntvcqceegtfreedspemcrkcdctpwsdi
- Chain 'S':
Sequence, based on SEQRES records: (download)
>1za3S (S:)
gshmalitqqdlapqqraapqqkrsspseglcppghhisedgrdcisckygqdysthwnd
llfclrctrcdsgevelspctttrntvcqceegtfreedspemcrkcrtgcprgmvkvgd
ctpwsdiecvhkes
Sequence, based on observed residues (ATOM records): (download)
>1za3S (S:)
sspseglcppghhisedgrdcisckygqdysthwndllfclrctrcdsgevelspctttr
ntvcqceegtfreedspemcrkcrtgcprgmvkvgdctpwsdiecv