PDB entry 1yp3

View 1yp3 on RCSB PDB site
Description: Crystal structure of potato tuber ADP-glucose pyrophosphorylase in complex with ATP
Class: transferase
Keywords: ADP-glucose pyrophosphorylase, ADP-glucose synthase, ADP-glucose pyrophosphorylase, AGPASE B, Alpha-D-glucose-1-phosphate adenyl transferase
Deposited on 2005-01-29, released 2005-03-15
The last revision prior to the SCOP 1.73 freeze date was dated 2005-03-15, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.175
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glucose-1-phosphate adenylyltransferase small subunit
    Species: Solanum tuberosum
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yp3a1, d1yp3a2
  • Chain 'B':
    Compound: Glucose-1-phosphate adenylyltransferase small subunit
    Species: Solanum tuberosum
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yp3b1, d1yp3b2
  • Chain 'C':
    Compound: Glucose-1-phosphate adenylyltransferase small subunit
    Species: Solanum tuberosum
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yp3c1, d1yp3c2
  • Chain 'D':
    Compound: Glucose-1-phosphate adenylyltransferase small subunit
    Species: Solanum tuberosum
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yp3d1, d1yp3d2
  • Heterogens: SO4, ATP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1yp3A (A:)
mavsdsqnsqtcldpdasrsvlgiilgggagtrlypltkkrakpavplganyrlidipvs
nclnsniskiyvltqfnsaslnrhlsrayasnmggyknegfvevlaaqqspenpdwfqgt
adavrqylwlfeehtvleylilagdhlyrmdyekfiqahretdaditvaalpmdekrata
fglmkideegriiefaekpqgeqlqamkvdttilglddkrakempfiasmgiyviskdvm
lnllrdkfpgandfgsevipgatslgmrvqaylydgywedigtieafynanlgitkkpvp
dfsfydrsapiytqprylppskmldadvtdsvigegcviknckihhsvvglrscisegai
iedsllmgadyyetdadrkllaakgsvpigigknchikraiidknarigdnvkiinkdnv
qeaaretdgyfiksgivtvikdalipsgiii

    Sequence, based on observed residues (ATOM records): (download) 
    >1yp3A (A:)
qtcldpdasrsvlgiilgggagtrlypltkkrakpavplganyrlidipvsnclnsnisk
iyvltqfnsaslnrhlsrayegfvevlaaqqspenpdwfqgtadavrqylwlfeehtvle
ylilagdhlyrmdyekfiqahretdaditvaalpmdekratafglmkideegriiefaek
pqgeqlqamkvdttilglddkrakempfiasmgiyviskdvmlnllrdkfpgandfgsev
ipgatslgmrvqaylydgywedigtieafynanlgitkkpvpdfsfydrsapiytqpryl
ppskmldadvtdsvigegcviknckihhsvvglrscisegaiiedsllmgadyyetdadr
kllaakgsvpigigknchikraiidknarigdnvkiinkdnvqeaaretdgyfiksgivt
vikdalipsgiii

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1yp3B (B:)
mavsdsqnsqtcldpdasrsvlgiilgggagtrlypltkkrakpavplganyrlidipvs
nclnsniskiyvltqfnsaslnrhlsrayasnmggyknegfvevlaaqqspenpdwfqgt
adavrqylwlfeehtvleylilagdhlyrmdyekfiqahretdaditvaalpmdekrata
fglmkideegriiefaekpqgeqlqamkvdttilglddkrakempfiasmgiyviskdvm
lnllrdkfpgandfgsevipgatslgmrvqaylydgywedigtieafynanlgitkkpvp
dfsfydrsapiytqprylppskmldadvtdsvigegcviknckihhsvvglrscisegai
iedsllmgadyyetdadrkllaakgsvpigigknchikraiidknarigdnvkiinkdnv
qeaaretdgyfiksgivtvikdalipsgiii

    Sequence, based on observed residues (ATOM records): (download) 
    >1yp3B (B:)
tcldpdasrsvlgiilgggagtrlypltkkrakpavplganyrlidipvsnclnsniski
yvltqfnsaslnrhlsrayasnnegfvevlaaqqspenqgtadavrqylwlfeehtvley
lilagdhlyrmdyekfiqahretdaditvaalpmdekratafglmkideegriiefaekp
qgeqlqamkvdttilglddkrakempfiasmgiyviskdvmlnllrdkfpgandfgsevi
pgatslgmrvqaylydgywedigtieafynanlgitkkpvpdfsfydrsapiytqprylp
pskmldadvtdsvigegcviknckihhsvvglrscisegaiiedsllmgadyyetdadrk
llaakgsvpigigknchikraiidknarigdnvkiinkdnvqeaaretdgyfiksgivtv
ikdalipsgiii

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1yp3C (C:)
mavsdsqnsqtcldpdasrsvlgiilgggagtrlypltkkrakpavplganyrlidipvs
nclnsniskiyvltqfnsaslnrhlsrayasnmggyknegfvevlaaqqspenpdwfqgt
adavrqylwlfeehtvleylilagdhlyrmdyekfiqahretdaditvaalpmdekrata
fglmkideegriiefaekpqgeqlqamkvdttilglddkrakempfiasmgiyviskdvm
lnllrdkfpgandfgsevipgatslgmrvqaylydgywedigtieafynanlgitkkpvp
dfsfydrsapiytqprylppskmldadvtdsvigegcviknckihhsvvglrscisegai
iedsllmgadyyetdadrkllaakgsvpigigknchikraiidknarigdnvkiinkdnv
qeaaretdgyfiksgivtvikdalipsgiii

    Sequence, based on observed residues (ATOM records): (download) 
    >1yp3C (C:)
qtcldpdasrsvlgiilgggagtrlypltkkrakpavplganyrlidipvsnclnsnisk
iyvltqfnsaslnrhlsrayasegfvevlaaqqspenpdwfqgtadavrqylwlfeehtv
leylilagdhlyrmdyekfiqahretdaditvaalpmdekratafglmkideegriiefa
ekpqgeqlqamkvdttilglddkrakempfiasmgiyviskdvmlnllrdkfpgandfgs
evipgatslgmrvqaylydgywedigtieafynanlgitkkpvpdfsfydrsapiytqpr
ylppskmldadvtdsvigegcviknckihhsvvglrscisegaiiedsllmgadyyetda
drkllaakgsvpigigknchikraiidknarigdnvkiinkdnvqeaaretdgyfiksgi
vtvikdalipsgiii

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1yp3D (D:)
mavsdsqnsqtcldpdasrsvlgiilgggagtrlypltkkrakpavplganyrlidipvs
nclnsniskiyvltqfnsaslnrhlsrayasnmggyknegfvevlaaqqspenpdwfqgt
adavrqylwlfeehtvleylilagdhlyrmdyekfiqahretdaditvaalpmdekrata
fglmkideegriiefaekpqgeqlqamkvdttilglddkrakempfiasmgiyviskdvm
lnllrdkfpgandfgsevipgatslgmrvqaylydgywedigtieafynanlgitkkpvp
dfsfydrsapiytqprylppskmldadvtdsvigegcviknckihhsvvglrscisegai
iedsllmgadyyetdadrkllaakgsvpigigknchikraiidknarigdnvkiinkdnv
qeaaretdgyfiksgivtvikdalipsgiii

    Sequence, based on observed residues (ATOM records): (download) 
    >1yp3D (D:)
ldpdasrsvlgiilgggagtrlypltkkrakpavplganyrlidipvsnclnsniskiyv
ltqfnsaslnrhlsraynegfvevlaaqqspegtadavrqylwlfeehtvleylilagdh
lyrmdyekfiqahretdaditvaalpmdekratafglmkideegriiefaekpqgeqlqa
mkvdttilglddkrakempfiasmgiyviskdvmlnllrdkfpgandfgsevipgatslg
mrvqaylydgywedigtieafynanlgitkkpvpdfsfydrsapiytqprylppskmlda
dvtdsvigegcviknckihhsvvglrscisegaiiedsllmgadyyetdadrkllaakgs
vpigigknchikraiidknarigdnvkiinkdnvqeaaretdgyfiksgivtvikdalip
sgiii