PDB entry 1ynt
View 1ynt on RCSB PDB site
Description: Structure of the immunodominant epitope displayed by the surface antigen 1 (SAG1) of Toxoplasma gondii complexed to a monoclonal antibody
Class: immune system
Keywords: Toxoplasma gondii, recombinant SAG1, conformational epitope, IMMUNE SYSTEM
Deposited on
2005-01-25, released
2005-12-27
The last revision prior to the SCOPe 2.06 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.241
AEROSPACI score: 0.15
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: 4F11E12 Fab variable light chain region
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1ynta1, d1ynta2 - Chain 'B':
Compound: 4F11E12 Fab variable heavy chain region
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1yntb1 - Chain 'C':
Compound: 4F11E12 Fab variable light chain region
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1yntc1, d1yntc2 - Chain 'D':
Compound: 4F11E12 Fab variable heavy chain region
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1yntd1 - Chain 'E':
Compound: protein l
Species: Finegoldia magna [TaxId:334413]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1ynte_ - Chain 'F':
Compound: Major Surface Antigen P30
Species: Toxoplasma gondii [TaxId:5811]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1yntf1, d1yntf2 - Chain 'G':
Compound: Major Surface Antigen P30
Species: Toxoplasma gondii [TaxId:5811]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1yntg1, d1yntg2 - Heterogens: CD
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1yntA (A:)
diqvtqttsslsaslgdrvtiscrasqdisnylnwyqqkpdgtvklliyytsrlhsgvps
rfsgsgsgtdysltisnleqediatyfcqqgntlpytfgggtkleikradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnrne
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1yntB (B:)
qvqlqqsgaelvrpgvsvkisckgsgytftdygmhwvkqshakslewigiistysgdasy
nqkfkgkatmtvdkssstaymelarltsedsaiyycarsstwyyfdywgqgttltvssak
ttapsvyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdly
tlsssvtvtsstwpsqsitcnvahpasstkvdkkiepr
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>1yntC (C:)
diqvtqttsslsaslgdrvtiscrasqdisnylnwyqqkpdgtvklliyytsrlhsgvps
rfsgsgsgtdysltisnleqediatyfcqqgntlpytfgggtkleikradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnrne
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>1yntD (D:)
qvqlqqsgaelvrpgvsvkisckgsgytftdygmhwvkqshakslewigiistysgdasy
nqkfkgkatmtvdkssstaymelarltsedsaiyycarsstwyyfdywgqgttltvssak
ttapsvyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdly
tlsssvtvtsstwpsqsitcnvahpasstkvdkkiepr
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>1yntE (E:)
evtikvnlifadgkiqtaefkgtfeeataeayryadllakvngeytadledggnhmnikf
a
- Chain 'F':
Sequence, based on SEQRES records: (download)
>1yntF (F:)
pplvanqvvtcpdkkstaaviltptenhftlkcpktaltepptlayspnrqicpagttss
ctskavtlsslipeaedswwtgdsasldtagikltvpiekfpvttqtfvvgcikgddaqs
cmvtvtvqarassvvnnvarcsygadstlgpvklsaegpttmtlvcgkdgvkvpqdnnqy
csgttltgcneksfkdilpkltenpwqgnassdkgatltikkeafpaesksviigctggs
pekhhctvklefag
Sequence, based on observed residues (ATOM records): (download)
>1yntF (F:)
plvanqvvtcpdkkstaaviltptenhftlkcpktaltepptlayspnrqicpagttssc
tskavtlsslipeaedswwtgdsasldtagikltvpiekfpvttqtfvvgcikgddaqsc
mvtvtvqarassvvnnvarcsygadstlgpvklsaegpttmtlvcgkdgvkvpqdnnqyc
sgttltgcneksfkdilpkltenpwqgnassdkgatltikkeafpaesksviigctggsp
ekhhctvklefa
- Chain 'G':
Sequence, based on SEQRES records: (download)
>1yntG (G:)
pplvanqvvtcpdkkstaaviltptenhftlkcpktaltepptlayspnrqicpagttss
ctskavtlsslipeaedswwtgdsasldtagikltvpiekfpvttqtfvvgcikgddaqs
cmvtvtvqarassvvnnvarcsygadstlgpvklsaegpttmtlvcgkdgvkvpqdnnqy
csgttltgcneksfkdilpkltenpwqgnassdkgatltikkeafpaesksviigctggs
pekhhctvklefag
Sequence, based on observed residues (ATOM records): (download)
>1yntG (G:)
plvanqvvtcpdkkstaaviltptenhftlkcpktaltepptlayspnrqicpagttssc
tskavtlsslipeaedswwtgdsasldtagikltvpiekfpvttqtfvvgcikgddaqsc
mvtvtvqarassvvnnvarcsygadstlgpvklsaegpttmtlvcgkdgvkvpqdnnqyc
sgttltgcneksfkdilpkltenpwqgnassdkgatltikkeafpaesksviigctggsp
ekhhctvklefa