PDB entry 1ynt
View 1ynt on RCSB PDB site
Description: Structure of the immunodominant epitope displayed by the surface antigen 1 (SAG1) of Toxoplasma gondii complexed to a monoclonal antibody
Class: immune system
Keywords: Toxoplasma gondii, recombinant SAG1, conformational epitope, crystal structure
Deposited on
2005-01-25, released
2005-12-27
The last revision prior to the SCOP 1.73 freeze date was dated
2005-12-27, with a file datestamp of
2007-06-28.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.241
AEROSPACI score: 0.14
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: 4F11E12 Fab variable light chain region
Species: MUS MUSCULUS
- Chain 'B':
Compound: 4F11E12 Fab variable heavy chain region
Species: MUS MUSCULUS
Domains in SCOP 1.73: d1yntb1 - Chain 'C':
Compound: 4F11E12 Fab variable light chain region
Species: MUS MUSCULUS
- Chain 'D':
Compound: 4F11E12 Fab variable heavy chain region
Species: MUS MUSCULUS
Domains in SCOP 1.73: d1yntd1 - Chain 'E':
Compound: protein l
Species: Peptostreptococcus magnus
Domains in SCOP 1.73: d1ynte1 - Chain 'F':
Compound: Major Surface Antigen P30
Species: Toxoplasma gondii
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1yntf1, d1yntf2 - Chain 'G':
Compound: Major Surface Antigen P30
Species: Toxoplasma gondii
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1yntg1, d1yntg2 - Heterogens: CD
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1yntB (B:)
qvqlqqsgaelvrpgvsvkisckgsgytftdygmhwvkqshakslewigiistysgdasy
nqkfkgkatmtvdkssstaymelarltsedsaiyycarsstwyyfdywgqgttltvssak
ttapsvyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdly
tlsssvtvtsstwpsqsitcnvahpasstkvdkkiepr
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>1yntD (D:)
qvqlqqsgaelvrpgvsvkisckgsgytftdygmhwvkqshakslewigiistysgdasy
nqkfkgkatmtvdkssstaymelarltsedsaiyycarsstwyyfdywgqgttltvssak
ttapsvyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdly
tlsssvtvtsstwpsqsitcnvahpasstkvdkkiepr
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>1yntE (E:)
evtikvnlifadgkiqtaefkgtfeeataeayryadllakvngeytadledggnhmnikf
a
- Chain 'F':
Sequence, based on SEQRES records: (download)
>1yntF (F:)
pplvanqvvtcpdkkstaaviltptenhftlkcpktaltepptlayspnrqicpagttss
ctskavtlsslipeaedswwtgdsasldtagikltvpiekfpvttqtfvvgcikgddaqs
cmvtvtvqarassvvnnvarcsygadstlgpvklsaegpttmtlvcgkdgvkvpqdnnqy
csgttltgcneksfkdilpkltenpwqgnassdkgatltikkeafpaesksviigctggs
pekhhctvklefag
Sequence, based on observed residues (ATOM records): (download)
>1yntF (F:)
plvanqvvtcpdkkstaaviltptenhftlkcpktaltepptlayspnrqicpagttssc
tskavtlsslipeaedswwtgdsasldtagikltvpiekfpvttqtfvvgcikgddaqsc
mvtvtvqarassvvnnvarcsygadstlgpvklsaegpttmtlvcgkdgvkvpqdnnqyc
sgttltgcneksfkdilpkltenpwqgnassdkgatltikkeafpaesksviigctggsp
ekhhctvklefa
- Chain 'G':
Sequence, based on SEQRES records: (download)
>1yntG (G:)
pplvanqvvtcpdkkstaaviltptenhftlkcpktaltepptlayspnrqicpagttss
ctskavtlsslipeaedswwtgdsasldtagikltvpiekfpvttqtfvvgcikgddaqs
cmvtvtvqarassvvnnvarcsygadstlgpvklsaegpttmtlvcgkdgvkvpqdnnqy
csgttltgcneksfkdilpkltenpwqgnassdkgatltikkeafpaesksviigctggs
pekhhctvklefag
Sequence, based on observed residues (ATOM records): (download)
>1yntG (G:)
plvanqvvtcpdkkstaaviltptenhftlkcpktaltepptlayspnrqicpagttssc
tskavtlsslipeaedswwtgdsasldtagikltvpiekfpvttqtfvvgcikgddaqsc
mvtvtvqarassvvnnvarcsygadstlgpvklsaegpttmtlvcgkdgvkvpqdnnqyc
sgttltgcneksfkdilpkltenpwqgnassdkgatltikkeafpaesksviigctggsp
ekhhctvklefa