PDB entry 1yl7
View 1yl7 on RCSB PDB site
Description: the crystal structure of Mycobacterium tuberculosis dihydrodipicolinate reductase (Rv2773c) in complex with NADH (crystal form C)
Class: oxidoreductase
Keywords: lysine biosynthesis, dihydrodipicolinate, reductase, NADH, Structural Genomics, PSI, Protein Structure Initiative, TB Structural Genomics Consortium, TBSGC, OXIDOREDUCTASE
Deposited on
2005-01-19, released
2006-01-17
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-10-11, with a file datestamp of
2017-10-06.
Experiment type: XRAY
Resolution: 2.34 Å
R-factor: N/A
AEROSPACI score: 0.23
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: dihydrodipicolinate reductase
Species: Mycobacterium tuberculosis [TaxId:1773]
Gene: DAPB
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1yl7a1, d1yl7a2, d1yl7a3 - Chain 'B':
Compound: dihydrodipicolinate reductase
Species: Mycobacterium tuberculosis [TaxId:1773]
Gene: DAPB
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1yl7b1, d1yl7b2, d1yl7b3 - Chain 'C':
Compound: dihydrodipicolinate reductase
Species: Mycobacterium tuberculosis [TaxId:1773]
Gene: DAPB
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1yl7c1, d1yl7c2, d1yl7c3 - Chain 'D':
Compound: dihydrodipicolinate reductase
Species: Mycobacterium tuberculosis [TaxId:1773]
Gene: DAPB
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1yl7d1, d1yl7d2, d1yl7d3 - Chain 'E':
Compound: dihydrodipicolinate reductase
Species: Mycobacterium tuberculosis [TaxId:1773]
Gene: DAPB
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1yl7e1, d1yl7e2, d1yl7e3 - Chain 'F':
Compound: dihydrodipicolinate reductase
Species: Mycobacterium tuberculosis [TaxId:1773]
Gene: DAPB
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1yl7f1, d1yl7f2, d1yl7f3 - Chain 'G':
Compound: dihydrodipicolinate reductase
Species: Mycobacterium tuberculosis [TaxId:1773]
Gene: DAPB
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1yl7g1, d1yl7g2, d1yl7g3 - Chain 'H':
Compound: dihydrodipicolinate reductase
Species: Mycobacterium tuberculosis [TaxId:1773]
Gene: DAPB
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1yl7h1, d1yl7h2, d1yl7h3 - Heterogens: MG, NAI, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1yl7A (A:)
arvgvlgakgkvgatmvravaaaddltlsaeldagdplslltdgntevvidfthpdvvmg
nleflidngihavvgttgftaerfqqveswlvakpntsvliapnfaigavlsmhfakqaa
rffdsaevielhhphkadapsgtaartakliaearkglppnpdatstslpgargadvdgi
pvhavrlaglvahqevlfgtegetltirhdsldrtsfvpgvllavrriaerpgltvglep
lldlh
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1yl7B (B:)
arvgvlgakgkvgatmvravaaaddltlsaeldagdplslltdgntevvidfthpdvvmg
nleflidngihavvgttgftaerfqqveswlvakpntsvliapnfaigavlsmhfakqaa
rffdsaevielhhphkadapsgtaartakliaearkglppnpdatstslpgargadvdgi
pvhavrlaglvahqevlfgtegetltirhdsldrtsfvpgvllavrriaerpgltvglep
lldlh
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>1yl7C (C:)
arvgvlgakgkvgatmvravaaaddltlsaeldagdplslltdgntevvidfthpdvvmg
nleflidngihavvgttgftaerfqqveswlvakpntsvliapnfaigavlsmhfakqaa
rffdsaevielhhphkadapsgtaartakliaearkglppnpdatstslpgargadvdgi
pvhavrlaglvahqevlfgtegetltirhdsldrtsfvpgvllavrriaerpgltvglep
lldlh
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>1yl7D (D:)
arvgvlgakgkvgatmvravaaaddltlsaeldagdplslltdgntevvidfthpdvvmg
nleflidngihavvgttgftaerfqqveswlvakpntsvliapnfaigavlsmhfakqaa
rffdsaevielhhphkadapsgtaartakliaearkglppnpdatstslpgargadvdgi
pvhavrlaglvahqevlfgtegetltirhdsldrtsfvpgvllavrriaerpgltvglep
lldlh
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>1yl7E (E:)
arvgvlgakgkvgatmvravaaaddltlsaeldagdplslltdgntevvidfthpdvvmg
nleflidngihavvgttgftaerfqqveswlvakpntsvliapnfaigavlsmhfakqaa
rffdsaevielhhphkadapsgtaartakliaearkglppnpdatstslpgargadvdgi
pvhavrlaglvahqevlfgtegetltirhdsldrtsfvpgvllavrriaerpgltvglep
lldlh
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>1yl7F (F:)
arvgvlgakgkvgatmvravaaaddltlsaeldagdplslltdgntevvidfthpdvvmg
nleflidngihavvgttgftaerfqqveswlvakpntsvliapnfaigavlsmhfakqaa
rffdsaevielhhphkadapsgtaartakliaearkglppnpdatstslpgargadvdgi
pvhavrlaglvahqevlfgtegetltirhdsldrtsfvpgvllavrriaerpgltvglep
lldlh
- Chain 'G':
Sequence; same for both SEQRES and ATOM records: (download)
>1yl7G (G:)
arvgvlgakgkvgatmvravaaaddltlsaeldagdplslltdgntevvidfthpdvvmg
nleflidngihavvgttgftaerfqqveswlvakpntsvliapnfaigavlsmhfakqaa
rffdsaevielhhphkadapsgtaartakliaearkglppnpdatstslpgargadvdgi
pvhavrlaglvahqevlfgtegetltirhdsldrtsfvpgvllavrriaerpgltvglep
lldlh
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>1yl7H (H:)
arvgvlgakgkvgatmvravaaaddltlsaeldagdplslltdgntevvidfthpdvvmg
nleflidngihavvgttgftaerfqqveswlvakpntsvliapnfaigavlsmhfakqaa
rffdsaevielhhphkadapsgtaartakliaearkglppnpdatstslpgargadvdgi
pvhavrlaglvahqevlfgtegetltirhdsldrtsfvpgvllavrriaerpgltvglep
lldlh