PDB entry 1yf6
View 1yf6 on RCSB PDB site
Description: Structure of a quintuple mutant of photosynthetic reaction center from rhodobacter sphaeroides
Class: photosynthesis
Keywords: bacterial photosynthesis, rhodobacter sphaeroides, gated electron transfer, quinone movement, integral membrane protein, photosynthesis
Deposited on
2004-12-30, released
2005-05-17
The last revision prior to the SCOPe 2.05 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-25.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: 0.197
AEROSPACI score: 0.39
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'H':
Compound: reaction center protein h chain
Species: Rhodobacter sphaeroides [TaxId:1063]
Gene: puhA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d1yf6h1, d1yf6h2 - Chain 'L':
Compound: reaction center protein l chain
Species: Rhodobacter sphaeroides [TaxId:1063]
Gene: pufL
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d1yf6l_ - Chain 'M':
Compound: reaction center protein m chain
Species: Rhodobacter sphaeroides [TaxId:1063]
Gene: pufM
Database cross-references and differences (RAF-indexed):
- Uniprot P02953 (0-End)
- engineered (202)
- engineered (209)
- engineered (213)
- engineered (259)
Domains in SCOPe 2.05: d1yf6m_ - Heterogens: FE2, CL, PO4, BCL, BPH, U10, SPO, CDL, HTO, LDA, GOL, HOH
PDB Chain Sequences:
- Chain 'H':
Sequence, based on SEQRES records: (download)
>1yf6H (H:)
mvgvtafgnfdlaslaiysfwiflagliyylqtenmregyplenedgtpaanqgpfplpk
pktfilphgrgtltvpgpesedrpialartavsegfphaptgdpmkdgvgpaswvarrdl
peldghghnkikpmkaaagfhvsagknpiglpvrgcdleiagkvvdiwvdipeqmarfle
velkdgstrllpmqmvkvqsnrvhvnalssdlfagiptiksptevtlleedkicgyvagg
lmyaapkrksvvaamlaeya
Sequence, based on observed residues (ATOM records): (download)
>1yf6H (H:)
dlaslaiysfwiflagliyylqtenmregyplenedgtpaanqgpfplpkpktfilphgr
gtltvpgpesedrpialartavsegfphaptgdpmkdgvgpaswvarrdlpeldghghnk
ikpmkaaagfhvsagknpiglpvrgcdleiagkvvdiwvdipeqmarflevelkdgstrl
lpmqmvkvqsnrvhvnalssdlfagiptiksptevtlleedkicgyvagglmyaapkr
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>1yf6L (L:)
allsferkyrvpggtlvggnlfdfwvgpfyvgffgvatfffaalgiiliawsavlqgtwn
pqlisvyppaleyglggaplakgglwqiiticatgafvswalreveicrklgigyhipfa
fafailayltlvlfrpvmmgawgyafpygiwthldwvsntgytygnfhynpahmiaisff
ytnalalalhgalvlsaanpekgkemrtpdhedtffrdlvgysigtlgihrlglllslsa
vffsalcmiitgtiwfdqwvdwwqwwvklpwwanipgging
- Chain 'M':
Sequence, based on SEQRES records: (download)
>1yf6M (M:)
aeyqnifsqvqvrgpadlgmtedvnlanrsgvgpfstllgwfgnaqlgpiylgslgvlsl
fsglmwfftigiwfwyqagwnpavflrdlfffsleppapeyglsfaaplkegglwliasf
fmfvavwswwgrtylraqalgmgkhtawaflsaiwlwmvlgfirpilmgswseavpygif
shldwtnnfslvhgnlfynpfhdlsiaflfgsahlfamhgatilavsrfggereleqiad
rgtaaeraalfwrwtmgfnwtmegihrwaiwmavlvtltggigillsgtvvdnwyvwgqn
hgmapln
Sequence, based on observed residues (ATOM records): (download)
>1yf6M (M:)
aeyqnifsqvqvrgpadlgmtedvnlanrsgvgpfstllgwfgnaqlgpiylgslgvlsl
fsglmwfftigiwfwyqagwnpavflrdlfffsleppapeyglsfaaplkegglwliasf
fmfvavwswwgrtylraqalgmgkhtawaflsaiwlwmvlgfirpilmgswseavpygif
shldwtnnfslvhgnlfynpfhdlsiaflfgsahlfamhgatilavsrfggereleqiad
rgtaaeraalfwrwtmgfnwtmegihrwaiwmavlvtltggigillsgtvvdnwyvwgqn
h