PDB entry 1yd8

View 1yd8 on RCSB PDB site
Description: complex of human gga3 gat domain and ubiquitin
Class: protein transport, chromosomal protein
Keywords: trafficking, post translational modification, mono-ubiquitination, protein transport;
Deposited on 2004-12-23, released 2005-02-22
The last revision prior to the SCOP 1.73 freeze date was dated 2005-02-22, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.221
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'G':
    Compound: ADP-ribosylation factor binding protein gga3
    Species: HOMO SAPIENS
    Gene: GGA3, KIAA0154
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9NZ52 (4-End)
      • cloning artifact (3)
  • Chain 'H':
    Compound: ADP-ribosylation factor binding protein gga3
    Species: HOMO SAPIENS
    Gene: GGA3, KIAA0154
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9NZ52 (4-End)
      • cloning artifact (3)
  • Chain 'U':
    Compound: ubiquin
    Species: BOS TAURUS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yd8u1
  • Chain 'V':
    Compound: ubiquin
    Species: BOS TAURUS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1yd8v1
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'U':
    Sequence, based on SEQRES records: (download) 
    >1yd8U (U:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >1yd8U (U:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrl

  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >1yd8V (V:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >1yd8V (V:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrl