PDB entry 1xgy
View 1xgy on RCSB PDB site
Description: Crystal Structure of Anti-Meta I Rhodopsin Fab Fragment K42-41L
Class: immune system
Keywords: Meta-I, Rhodopsin, Fab, Igg, K42-41L, Phage display, antibody, immunoglobulin, antibody imprinting, peptide mimetics, immune system
Deposited on
2004-09-17, released
2005-09-27
The last revision prior to the SCOP 1.75 freeze date was dated
2008-11-04, with a file datestamp of
2008-10-31.
Experiment type: XRAY
Resolution: 2.71 Å
R-factor: 0.233
AEROSPACI score: 0.31
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'H':
Compound: K42-41L Fab Heavy Chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1xgyh1 - Chain 'I':
Compound: K42-41L Fab Heavy Chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1xgyi1 - Chain 'L':
Compound: K42-41L Fab Light Chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Chain 'M':
Compound: K42-41L Fab Light Chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Chain 'P':
Compound: Rhodopsin Epitope Mimetic Peptide
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'Q':
Compound: Rhodopsin Epitope Mimetic Peptide
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'H':
Sequence, based on SEQRES records: (download)
>1xgyH (H:)
qvqlqqsgpelvrpgasvkisckasgytftdyyinwvkqrpgqglewigwifprngntky
nekfkgkatltvdkssstafmqlssltsedsavyfcattvsyvmdywgqgttvtvssakt
tppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlyt
lsssvtvpsstwpsetvtcnvahpasstkvdkkivprdc
Sequence, based on observed residues (ATOM records): (download)
>1xgyH (H:)
qvqlqqsgpelvrpgasvkisckasgytftdyyinwvkqrpgqglewigwifprngntky
nekfkgkatltvdkssstafmqlssltsedsavyfcattvsyvmdywgqgttvtvssakt
tppsvyplapgsatnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytls
ssvtvpsstwpsetvtcnvahpasstkvdkkivprd
- Chain 'I':
Sequence, based on SEQRES records: (download)
>1xgyI (I:)
qvqlqqsgpelvrpgasvkisckasgytftdyyinwvkqrpgqglewigwifprngntky
nekfkgkatltvdkssstafmqlssltsedsavyfcattvsyvmdywgqgttvtvssakt
tppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlyt
lsssvtvpsstwpsetvtcnvahpasstkvdkkivprdc
Sequence, based on observed residues (ATOM records): (download)
>1xgyI (I:)
qvqlqqsgpelvrpgasvkisckasgytftdyyinwvkqrpgqglewigwifprngntky
nekfkgkatltvdkssstafmqlssltsedsavyfcattvsyvmdywgqgttvtvssakt
tppsvyplapgsansmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlss
svtvpsstwpsetvtcnvahpasstkvdkkivprd
- Chain 'L':
No sequence available.
- Chain 'M':
No sequence available.
- Chain 'P':
No sequence available.
- Chain 'Q':
No sequence available.