PDB entry 1xdt

View 1xdt on RCSB PDB site
Description: complex of diphtheria toxin and heparin-binding epidermal growth factor
Class: complex (toxin/growth factor)
Keywords: complex (toxin/growth factor), diphtheria toxin, receptor, heparin-binding epidermal growth factor, epidermal growth factor
Deposited on 1997-11-18, released 1998-02-25
The last revision prior to the SCOP 1.75 freeze date was dated 2003-04-01, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: 0.172
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'R':
    Compound: heparin-binding epidermal growth factor
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1xdtr_
  • Chain 'T':
    Compound: diphtheria toxin
    Species: Corynebacterium diphtheriae
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1xdtt1, d1xdtt2, d1xdtt3
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >1xdtR (R:)
gshmrvtlsskpqalatpnkeehgkrkkkgkglgkkrdpclrkykdfcihgeckyvkelr
apscichpgyhgerchgls

    Sequence, based on observed residues (ATOM records): (download) 
    >1xdtR (R:)
pclrkykdfcihgeckyvkelrapscichpgyhgerchgls

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >1xdtT (T:)
gaddvvdssksfvmenfssyhgtkpgyvdsiqkgiqkpksgtqgnydddwkgfystdnky
daagysvdnenplsgkaggvvkvtypgltkvlalkvdnaetikkelglslteplmeqvgt
eefikrfgdgasrvvlslpfaegsssveyinnweqakalsveleinfetrgkrgqdamye
ymaqacagnrvrrsvgsslscinldwdvirdktktkieslkehgpiknkmsespnktvse
ekakqyleefhqtalehpelselktvtgtnpvfaganyaawavnvaqvidsetadnlekt
taalsilpgigsvmgiadgavhhnteeivaqsialsslmvaqaiplvgelvdigfaaynf
vesiinlfqvvhnsynrpayspghktqpflhdgyavswntvedsiirtgfqgesghdiki
taentplpiagvllptipgkldvnkskthisvngrkirmrcraidgdvtfcrpkspvyvg
ngvhanlhvafhrsssekihsneissdsigvlgyqktvdhtkvnsklslffeiks

    Sequence, based on observed residues (ATOM records): (download) 
    >1xdtT (T:)
gaddvvdssksfvmenfssyhgtkpgyvdsiqkgiqkpnydddwkgfystdnkydaagys
vdnenplsgkaggvvkvtypgltkvlalkvdnaetikkelglslteplmeqvgteefikr
fgdgasrvvlslpfaegsssveyinnweqakalsveleinfetrgkrgqdamyeymaqac
agscinldwdvirdktktkieslkehgpiknkmsespnktvseekakqyleefhqtaleh
pelselktvtgtnpvfaganyaawavnvaqvidsetadnlekttaalsilpgigsvmgia
dgavhhnteeivaqsialsslmvaqaiplvgelvdigfaaynfvesiinlfqvvhnsynr
payspghktqpflhdgyavswntvedsiirtgfqgesghdikitaentplpiagvllpti
pgkldvnkskthisvngrkirmrcraidgdvtfcrpkspvyvgngvhanlhvafhrssse
kihsneissdsigvlgyqktvdhtkvnsklslffeiks