PDB entry 1x9y

View 1x9y on RCSB PDB site
Description: The prostaphopain B structure
Class: hydrolase
Keywords: half-barrel, barrel-sandwich-hybrid
Deposited on 2004-08-24, released 2004-11-23
The last revision prior to the SCOP 1.73 freeze date was dated 2004-11-23, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.244
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: cysteine proteinase
    Species: Staphylococcus aureus
    Gene: SSPB
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q70UQ8 (Start-358)
      • cloning artifact (359-362)
    Domains in SCOP 1.73: d1x9ya1, d1x9ya2
  • Chain 'B':
    Compound: cysteine proteinase
    Species: Staphylococcus aureus
    Gene: SSPB
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q70UQ8 (Start-358)
      • cloning artifact (359-362)
    Domains in SCOP 1.73: d1x9yb1, d1x9yb2
  • Chain 'C':
    Compound: cysteine proteinase
    Species: Staphylococcus aureus
    Gene: SSPB
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q70UQ8 (Start-358)
      • cloning artifact (359-362)
    Domains in SCOP 1.73: d1x9yc1, d1x9yc2
  • Chain 'D':
    Compound: cysteine proteinase
    Species: Staphylococcus aureus
    Gene: SSPB
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q70UQ8 (Start-358)
      • cloning artifact (359-362)
    Domains in SCOP 1.73: d1x9yd1, d1x9yd2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1x9yA (A:)
gsdshskqleinvksdkvpqkvkdlaqqqfagyakaldkqsnaktgkyelgeafkiykfn
geednsyyypvikdgkivytltlspknkddlnkskedmnysvkisnfiakdldqikdkns
nitvltdekgfyfeedgkvrlvkatplannikekesaktvspqlkqelkttvtptkveen
eaiqedqvqyentlknfkireqqfdnswcagfsmaallnatkntdtynahdimrtlypev
seqdlpncatfpnqmieygksqgrdihyqegvpsynqvdqltkdnvgimilaqsvsqnpn
dphlghalavvgnakindqekliywnpwdtelsiqdadssllhlsfnrdynwygsmigyl
evpihrd

    Sequence, based on observed residues (ATOM records): (download) 
    >1x9yA (A:)
kqleinvksdkvpqkvkdlaqqqfagyakaldkqsnaktgkyelgeafkiykfngeedns
yyypvikdgkivytltlspknkddlnkskedmnysvkisnfiakdldqikdknsnitvlt
dekgfyfeedgkvrlvkatplannikekesaktvspqlkqelkttvtptkvqyentlknf
kireqqfdnswcagfsmaallnatkntdtynahdimrtlypevseqdlpncatfpnqmie
ygksqgrdihyqegvpsynqvdqltkdnvgimilaqsvsqnpndphlghalavvgnakin
dqekliywnpwdtelsiqdadssllhlsfnrdynwygsmigylevp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1x9yB (B:)
gsdshskqleinvksdkvpqkvkdlaqqqfagyakaldkqsnaktgkyelgeafkiykfn
geednsyyypvikdgkivytltlspknkddlnkskedmnysvkisnfiakdldqikdkns
nitvltdekgfyfeedgkvrlvkatplannikekesaktvspqlkqelkttvtptkveen
eaiqedqvqyentlknfkireqqfdnswcagfsmaallnatkntdtynahdimrtlypev
seqdlpncatfpnqmieygksqgrdihyqegvpsynqvdqltkdnvgimilaqsvsqnpn
dphlghalavvgnakindqekliywnpwdtelsiqdadssllhlsfnrdynwygsmigyl
evpihrd

    Sequence, based on observed residues (ATOM records): (download) 
    >1x9yB (B:)
kqleinvksdkvpqkvkdlaqqqfagyakaldkqsnaktgkyelgeafkiykfngeedns
yyypvikdgkivytltlspknkddlnkskedmnysvkisnfiakdldqikdknsnitvlt
dekgfyfeedgkvrlvkatplannikekesaktvspqlkqelkttvtptkvqyentlknf
kireqqfdnswcagfsmaallnatkntdtynahdimrtlypevseqdlpncatfpnqmie
ygksqgrdihyqegvpsynqvdqltkdnvgimilaqsvsqnpndphlghalavvgnakin
dqekliywnpwdtelsiqdadssllhlsfnrdynwygsmigylevp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1x9yC (C:)
gsdshskqleinvksdkvpqkvkdlaqqqfagyakaldkqsnaktgkyelgeafkiykfn
geednsyyypvikdgkivytltlspknkddlnkskedmnysvkisnfiakdldqikdkns
nitvltdekgfyfeedgkvrlvkatplannikekesaktvspqlkqelkttvtptkveen
eaiqedqvqyentlknfkireqqfdnswcagfsmaallnatkntdtynahdimrtlypev
seqdlpncatfpnqmieygksqgrdihyqegvpsynqvdqltkdnvgimilaqsvsqnpn
dphlghalavvgnakindqekliywnpwdtelsiqdadssllhlsfnrdynwygsmigyl
evpihrd

    Sequence, based on observed residues (ATOM records): (download) 
    >1x9yC (C:)
kqleinvksdkvpqkvkdlaqqqfagyakaldkqsnaktgkyelgeafkiykfngeedns
yyypvikdgkivytltlspknkddlnkskedmnysvkisnfiakdldqikdknsnitvlt
dekgfyfeedgkvrlvkatplannikekesaktvspqlkqelkttvtptkvqyentlknf
kireqqfdnswcagfsmaallnatkntdtynahdimrtlypevseqdlpncatfpnqmie
ygksqgrdihyqegvpsynqvdqltkdnvgimilaqsvsqnpndphlghalavvgnakin
dqekliywnpwdtelsiqdadssllhlsfnrdynwygsmigylevp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1x9yD (D:)
gsdshskqleinvksdkvpqkvkdlaqqqfagyakaldkqsnaktgkyelgeafkiykfn
geednsyyypvikdgkivytltlspknkddlnkskedmnysvkisnfiakdldqikdkns
nitvltdekgfyfeedgkvrlvkatplannikekesaktvspqlkqelkttvtptkveen
eaiqedqvqyentlknfkireqqfdnswcagfsmaallnatkntdtynahdimrtlypev
seqdlpncatfpnqmieygksqgrdihyqegvpsynqvdqltkdnvgimilaqsvsqnpn
dphlghalavvgnakindqekliywnpwdtelsiqdadssllhlsfnrdynwygsmigyl
evpihrd

    Sequence, based on observed residues (ATOM records): (download) 
    >1x9yD (D:)
kqleinvksdkvpqkvkdlaqqqfagyakaldkqsnaktgkyelgeafkiykfngeedns
yyypvikdgkivytltlspknkddlnkskedmnysvkisnfiakdldqikdknsnitvlt
dekgfyfeedgkvrlvkatplannikekesaktvspqlkqelkttvtptkvqyentlknf
kireqqfdnswcagfsmaallnatkntdtynahdimrtlypevseqdlpncatfpnqmie
ygksqgrdihyqegvpsynqvdqltkdnvgimilaqsvsqnpndphlghalavvgnakin
dqekliywnpwdtelsiqdadssllhlsfnrdynwygsmigylevp