PDB entry 1w8r

View 1w8r on RCSB PDB site
Description: the mechanism of the schiff base forming fructose-1,6-bisphosphate aldolase: structural analysis of reaction intermediates
Class: lyase
Keywords: aldolase, fructose 1, 6-bisphosphate, tim barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase
Deposited on 2004-09-27, released 2005-03-23
The last revision prior to the SCOP 1.75 freeze date was dated 2005-03-23, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.93 Å
R-factor: 0.149
AEROSPACI score: 0.59 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: fructose-bisphosphate aldolase class I
    Species: Thermoproteus tenax
    Database cross-references and differences (RAF-indexed):
    • Uniprot P58315
      • engineered mutation (145)
    Domains in SCOP 1.75: d1w8ra1
  • Chain 'B':
    Compound: fructose-bisphosphate aldolase class I
    Species: Thermoproteus tenax
    Database cross-references and differences (RAF-indexed):
    • Uniprot P58315
      • engineered mutation (145)
    Domains in SCOP 1.75: d1w8rb1
  • Chain 'C':
    Compound: fructose-bisphosphate aldolase class I
    Species: Thermoproteus tenax
    Database cross-references and differences (RAF-indexed):
    • Uniprot P58315
      • engineered mutation (145)
    Domains in SCOP 1.75: d1w8rc1
  • Chain 'D':
    Compound: fructose-bisphosphate aldolase class I
    Species: Thermoproteus tenax
    Database cross-references and differences (RAF-indexed):
    • Uniprot P58315
      • engineered mutation (145)
    Domains in SCOP 1.75: d1w8rd1
  • Chain 'E':
    Compound: fructose-bisphosphate aldolase class I
    Species: Thermoproteus tenax
    Database cross-references and differences (RAF-indexed):
    • Uniprot P58315
      • engineered mutation (145)
    Domains in SCOP 1.75: d1w8re1
  • Chain 'F':
    Compound: fructose-bisphosphate aldolase class I
    Species: Thermoproteus tenax
    Database cross-references and differences (RAF-indexed):
    • Uniprot P58315
      • engineered mutation (145)
    Domains in SCOP 1.75: d1w8rf1
  • Chain 'G':
    Compound: fructose-bisphosphate aldolase class I
    Species: Thermoproteus tenax
    Database cross-references and differences (RAF-indexed):
    • Uniprot P58315
      • engineered mutation (145)
    Domains in SCOP 1.75: d1w8rg1
  • Chain 'H':
    Compound: fructose-bisphosphate aldolase class I
    Species: Thermoproteus tenax
    Database cross-references and differences (RAF-indexed):
    • Uniprot P58315
      • engineered mutation (145)
    Domains in SCOP 1.75: d1w8rh1
  • Chain 'I':
    Compound: fructose-bisphosphate aldolase class I
    Species: Thermoproteus tenax
    Database cross-references and differences (RAF-indexed):
    • Uniprot P58315
      • engineered mutation (145)
    Domains in SCOP 1.75: d1w8ri1
  • Chain 'J':
    Compound: fructose-bisphosphate aldolase class I
    Species: Thermoproteus tenax
    Database cross-references and differences (RAF-indexed):
    • Uniprot P58315
      • engineered mutation (145)
    Domains in SCOP 1.75: d1w8rj1
  • Heterogens: F2P, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1w8rA (A:)
    manltekflrifarrgksiilaydhgiehgpadfmdnpdsadpeyilrlardagfdgvvf
    qrgiaekyydgsvplilklngkttlyngepvsvancsveeavslgasavgytiypgsgfe
    wkmfeelarikrdavkfdlplvvwsfprggkvvnetapeivayaarialelgadamkiky
    tgdpktfswavkvagkvpvlmsggpktkteedflkqvegvleagalgiavgrnvwqrrda
    lkfaralaelvyggkklaeplnv
    

    Sequence, based on observed residues (ATOM records): (download)
    >1w8rA (A:)
    nltekflrifarrgksiilaydhgiehgpadfmdnpdsadpeyilrlardagfdgvvfqr
    giaekyydgsvplilklngkttlyngepvsvancsveeavslgasavgytiypgsgfewk
    mfeelarikrdavkfdlplvvwsfprggkvvnetapeivayaarialelgadamkikytg
    dpktfswavkvagkvpvlmsggpktkteedflkqvegvleagalgiavgrnvwqrrdalk
    faralaelvy
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1w8rB (B:)
    manltekflrifarrgksiilaydhgiehgpadfmdnpdsadpeyilrlardagfdgvvf
    qrgiaekyydgsvplilklngkttlyngepvsvancsveeavslgasavgytiypgsgfe
    wkmfeelarikrdavkfdlplvvwsfprggkvvnetapeivayaarialelgadamkiky
    tgdpktfswavkvagkvpvlmsggpktkteedflkqvegvleagalgiavgrnvwqrrda
    lkfaralaelvyggkklaeplnv
    

    Sequence, based on observed residues (ATOM records): (download)
    >1w8rB (B:)
    nltekflrifarrgksiilaydhgiehgpadfmdnpdsadpeyilrlardagfdgvvfqr
    giaekyydgsvplilklngkttlyngepvsvancsveeavslgasavgytiypgsgfewk
    mfeelarikrdavkfdlplvvwsfprggkvvnetapeivayaarialelgadamkikytg
    dpktfswavkvagkvpvlmsggpktkteedflkqvegvleagalgiavgrnvwqrrdalk
    faralaelvy
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >1w8rC (C:)
    manltekflrifarrgksiilaydhgiehgpadfmdnpdsadpeyilrlardagfdgvvf
    qrgiaekyydgsvplilklngkttlyngepvsvancsveeavslgasavgytiypgsgfe
    wkmfeelarikrdavkfdlplvvwsfprggkvvnetapeivayaarialelgadamkiky
    tgdpktfswavkvagkvpvlmsggpktkteedflkqvegvleagalgiavgrnvwqrrda
    lkfaralaelvyggkklaeplnv
    

    Sequence, based on observed residues (ATOM records): (download)
    >1w8rC (C:)
    nltekflrifarrgksiilaydhgiehgpadfmdnpdsadpeyilrlardagfdgvvfqr
    giaekyydgsvplilklngkttlyngepvsvancsveeavslgasavgytiypgsgfewk
    mfeelarikrdavkfdlplvvwsfprggkvvnetapeivayaarialelgadamkikytg
    dpktfswavkvagkvpvlmsggpktkteedflkqvegvleagalgiavgrnvwqrrdalk
    faralaelvy
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >1w8rD (D:)
    manltekflrifarrgksiilaydhgiehgpadfmdnpdsadpeyilrlardagfdgvvf
    qrgiaekyydgsvplilklngkttlyngepvsvancsveeavslgasavgytiypgsgfe
    wkmfeelarikrdavkfdlplvvwsfprggkvvnetapeivayaarialelgadamkiky
    tgdpktfswavkvagkvpvlmsggpktkteedflkqvegvleagalgiavgrnvwqrrda
    lkfaralaelvyggkklaeplnv
    

    Sequence, based on observed residues (ATOM records): (download)
    >1w8rD (D:)
    nltekflrifarrgksiilaydhgiehgpadfmdnpdsadpeyilrlardagfdgvvfqr
    giaekyydgsvplilklngkttlyngepvsvancsveeavslgasavgytiypgsgfewk
    mfeelarikrdavkfdlplvvwsfprggkvvnetapeivayaarialelgadamkikytg
    dpktfswavkvagkvpvlmsggpktkteedflkqvegvleagalgiavgrnvwqrrdalk
    faralaelvy
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >1w8rE (E:)
    manltekflrifarrgksiilaydhgiehgpadfmdnpdsadpeyilrlardagfdgvvf
    qrgiaekyydgsvplilklngkttlyngepvsvancsveeavslgasavgytiypgsgfe
    wkmfeelarikrdavkfdlplvvwsfprggkvvnetapeivayaarialelgadamkiky
    tgdpktfswavkvagkvpvlmsggpktkteedflkqvegvleagalgiavgrnvwqrrda
    lkfaralaelvyggkklaeplnv
    

    Sequence, based on observed residues (ATOM records): (download)
    >1w8rE (E:)
    nltekflrifarrgksiilaydhgiehgpadfmdnpdsadpeyilrlardagfdgvvfqr
    giaekyydgsvplilklngkttlyngepvsvancsveeavslgasavgytiypgsgfewk
    mfeelarikrdavkfdlplvvwsfprggkvvnetapeivayaarialelgadamkikytg
    dpktfswavkvagkvpvlmsggpktkteedflkqvegvleagalgiavgrnvwqrrdalk
    faralaelvygg
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >1w8rF (F:)
    manltekflrifarrgksiilaydhgiehgpadfmdnpdsadpeyilrlardagfdgvvf
    qrgiaekyydgsvplilklngkttlyngepvsvancsveeavslgasavgytiypgsgfe
    wkmfeelarikrdavkfdlplvvwsfprggkvvnetapeivayaarialelgadamkiky
    tgdpktfswavkvagkvpvlmsggpktkteedflkqvegvleagalgiavgrnvwqrrda
    lkfaralaelvyggkklaeplnv
    

    Sequence, based on observed residues (ATOM records): (download)
    >1w8rF (F:)
    nltekflrifarrgksiilaydhgiehgpadfmdnpdsadpeyilrlardagfdgvvfqr
    giaekyydgsvplilklngkttlyngepvsvancsveeavslgasavgytiypgsgfewk
    mfeelarikrdavkfdlplvvwsfprggkvvnetapeivayaarialelgadamkikytg
    dpktfswavkvagkvpvlmsggpktkteedflkqvegvleagalgiavgrnvwqrrdalk
    faralaelvy
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >1w8rG (G:)
    manltekflrifarrgksiilaydhgiehgpadfmdnpdsadpeyilrlardagfdgvvf
    qrgiaekyydgsvplilklngkttlyngepvsvancsveeavslgasavgytiypgsgfe
    wkmfeelarikrdavkfdlplvvwsfprggkvvnetapeivayaarialelgadamkiky
    tgdpktfswavkvagkvpvlmsggpktkteedflkqvegvleagalgiavgrnvwqrrda
    lkfaralaelvyggkklaeplnv
    

    Sequence, based on observed residues (ATOM records): (download)
    >1w8rG (G:)
    nltekflrifarrgksiilaydhgiehgpadfmdnpdsadpeyilrlardagfdgvvfqr
    giaekyydgsvplilklngkttlyngepvsvancsveeavslgasavgytiypgsgfewk
    mfeelarikrdavkfdlplvvwsfprggkvvnetapeivayaarialelgadamkikytg
    dpktfswavkvagkvpvlmsggpktkteedflkqvegvleagalgiavgrnvwqrrdalk
    faralaelvy
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >1w8rH (H:)
    manltekflrifarrgksiilaydhgiehgpadfmdnpdsadpeyilrlardagfdgvvf
    qrgiaekyydgsvplilklngkttlyngepvsvancsveeavslgasavgytiypgsgfe
    wkmfeelarikrdavkfdlplvvwsfprggkvvnetapeivayaarialelgadamkiky
    tgdpktfswavkvagkvpvlmsggpktkteedflkqvegvleagalgiavgrnvwqrrda
    lkfaralaelvyggkklaeplnv
    

    Sequence, based on observed residues (ATOM records): (download)
    >1w8rH (H:)
    nltekflrifarrgksiilaydhgiehgpadfmdnpdsadpeyilrlardagfdgvvfqr
    giaekyydgsvplilklngkttlyngepvsvancsveeavslgasavgytiypgsgfewk
    mfeelarikrdavkfdlplvvwsfprggkvvnetapeivayaarialelgadamkikytg
    dpktfswavkvagkvpvlmsggpktkteedflkqvegvleagalgiavgrnvwqrrdalk
    faralaelvy
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >1w8rI (I:)
    manltekflrifarrgksiilaydhgiehgpadfmdnpdsadpeyilrlardagfdgvvf
    qrgiaekyydgsvplilklngkttlyngepvsvancsveeavslgasavgytiypgsgfe
    wkmfeelarikrdavkfdlplvvwsfprggkvvnetapeivayaarialelgadamkiky
    tgdpktfswavkvagkvpvlmsggpktkteedflkqvegvleagalgiavgrnvwqrrda
    lkfaralaelvyggkklaeplnv
    

    Sequence, based on observed residues (ATOM records): (download)
    >1w8rI (I:)
    nltekflrifarrgksiilaydhgiehgpadfmdnpdsadpeyilrlardagfdgvvfqr
    giaekyydgsvplilklngkttlyngepvsvancsveeavslgasavgytiypgsgfewk
    mfeelarikrdavkfdlplvvwsfprggkvvnetapeivayaarialelgadamkikytg
    dpktfswavkvagkvpvlmsggpktkteedflkqvegvleagalgiavgrnvwqrrdalk
    faralaelvy
    

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >1w8rJ (J:)
    manltekflrifarrgksiilaydhgiehgpadfmdnpdsadpeyilrlardagfdgvvf
    qrgiaekyydgsvplilklngkttlyngepvsvancsveeavslgasavgytiypgsgfe
    wkmfeelarikrdavkfdlplvvwsfprggkvvnetapeivayaarialelgadamkiky
    tgdpktfswavkvagkvpvlmsggpktkteedflkqvegvleagalgiavgrnvwqrrda
    lkfaralaelvyggkklaeplnv
    

    Sequence, based on observed residues (ATOM records): (download)
    >1w8rJ (J:)
    nltekflrifarrgksiilaydhgiehgpadfmdnpdsadpeyilrlardagfdgvvfqr
    giaekyydgsvplilklngkttlyngepvsvancsveeavslgasavgytiypgsgfewk
    mfeelarikrdavkfdlplvvwsfprggkvvnetapeivayaarialelgadamkikytg
    dpktfswavkvagkvpvlmsggpktkteedflkqvegvleagalgiavgrnvwqrrdalk
    faralaelvy