PDB entry 1vgk

View 1vgk on RCSB PDB site
Description: The crystal structure of class I Major histocompatibility complex, H-2Kd at 2.0 A resolution
Class: immune system
Keywords: MHC, H-2Kd, crystal structure, class I, IMMUNE SYSTEM
Deposited on 2004-04-27, released 2005-06-28
The last revision prior to the SCOPe 2.02 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.06 Å
R-factor: 0.19
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: H-2 class I histocompatibility antigen, K-D alpha chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1vgka1, d1vgka2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1vgkb_
  • Chain 'C':
    Compound: syvntnmgl
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 1VGK (0-8)
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1vgkA (A:)
    gphslryfvtavsrpglgeprfiavgyvddtqfvrfdsdadnprfeprapwmeqegpeyw
    eeqtqraksdeqwfrvslrtaqryynqskggshtfqrmfgcdvgsdwrllrgyqqfaydg
    rdyialnedlktwtaadtaalitrrkweqagdaeyyraylegecvewlrrylelgnetll
    rtdspkahvtyhprsqvdvtlrcwalgfypaditltwqlngedltqdmelvetrpagdgt
    fqkwaavvvplgkeqnytchvhhkglpepltlrw
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1vgkB (B:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'C':
    No sequence available.