PDB entry 1uqs

View 1uqs on RCSB PDB site
Description: the crystal structure of human cd1b with a bound bacterial glycolipid
Class: glycoprotein
Keywords: glycoprotein, lipid, gmm, cd1b, MHC, antigen presentation
Deposited on 2003-10-16, released 2003-10-30
The last revision prior to the SCOPe 2.02 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.236
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: T-cell surface glycoprotein cd1b
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 1UQS
    • Uniprot P29016 (Start-279)
    Domains in SCOPe 2.02: d1uqsa1, d1uqsa2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1uqsb_
  • Heterogens: GMM, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1uqsA (A:)
    mgsehafqgptsfhviqtssftnstwaqtqgsgwlddlqihgwdsdsgtaiflkpwskgn
    fsdkevaeleeifrvyifgfarevqdfagdfqmkypfeiqgiagcelhsggaivsflrga
    lggldflsvknascvpspeggsraqkfcaliiqyqgimetvrillyetcpryllgvlnag
    kadlqrqvkpeawlssgpspgpgrlqlvchvsgfypkpvwvmwmrgeqeqqgtqlgdilp
    nanwtwylratldvadgeaaglscrvkhsslegqdiilywgpgsggglndifeaqkiewh
    

    Sequence, based on observed residues (ATOM records): (download)
    >1uqsA (A:)
    afqgptsfhviqtssftnstwaqtqgsgwlddlqihgwdsdsgtaiflkpwskgnfsdke
    vaeleeifrvyifgfarevqdfagdfqmkypfeiqgiagcelhsggaivsflrgalggld
    flsvknascvpspeggsraqkfcaliiqyqgimetvrillyetcpryllgvlnagkadlq
    rqvkpeawlssgpspgpgrlqlvchvsgfypkpvwvmwmrgeqeqqgtqlgdilpnanwt
    wylratldvadgeaaglscrvkhsslegqdiilywgpgsgg
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1uqsB (B:)
    miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
    wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm