SCOPe 2.04: Structural Classification of Proteins

PDB entry 1upp

View 1upp on RCSB PDB site
Description: spinach rubisco in complex with 2-carboxyarabinitol 2 bisphosphate and calcium.
Class: lyase
Keywords: lyase, carbon-carbon, oxidoreductase, photosynthesis, carbon-dioxide fixation
Deposited on 2003-10-09, released 2003-10-14
The last revision prior to the SCOPe 2.04 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.25862
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: ribulose bisphosphate carboxylase large chain
Species: Spinacia oleracea [TaxId:3562]
Database cross-references and differences (RAF-indexed):
- Uniprot P00875 (Start-474)
Domains in SCOPe 2.04: d1uppa1, d1uppa2
Chain 'C':
Compound: ribulose bisphosphate carboxylase large chain
Species: Spinacia oleracea [TaxId:3562]
Database cross-references and differences (RAF-indexed):
- Uniprot P00875 (Start-474)
Domains in SCOPe 2.04: d1uppc1, d1uppc2
Chain 'E':
Compound: ribulose bisphosphate carboxylase large chain
Species: Spinacia oleracea [TaxId:3562]
Database cross-references and differences (RAF-indexed):
- Uniprot P00875 (Start-474)
Domains in SCOPe 2.04: d1uppe1, d1uppe2
Chain 'G':
Compound: ribulose bisphosphate carboxylase large chain
Species: Spinacia oleracea [TaxId:3562]
Database cross-references and differences (RAF-indexed):
- Uniprot P00875 (Start-474)
Domains in SCOPe 2.04: d1uppg1, d1uppg2
Chain 'I':
Compound: ribulose bisphosphate carboxylase small chain
Species: Spinacia oleracea [TaxId:3562]
Database cross-references and differences (RAF-indexed):
- Uniprot Q43832 (0-122)
  - conflict (1)
  - conflict (5-6)
  - conflict (8)
  - conflict (10)
  - conflict (108)
  - conflict (112)
Domains in SCOPe 2.04: d1uppi_
Chain 'J':
Compound: ribulose bisphosphate carboxylase small chain
Species: Spinacia oleracea [TaxId:3562]
Database cross-references and differences (RAF-indexed):
- Uniprot Q43832 (0-122)
  - conflict (1)
  - conflict (5-6)
  - conflict (8)
  - conflict (10)
  - conflict (108)
  - conflict (112)
Domains in SCOPe 2.04: d1uppj_
Chain 'K':
Compound: ribulose bisphosphate carboxylase small chain
Species: Spinacia oleracea [TaxId:3562]
Database cross-references and differences (RAF-indexed):
- Uniprot Q43832 (0-122)
  - conflict (1)
  - conflict (5-6)
  - conflict (8)
  - conflict (10)
  - conflict (108)
  - conflict (112)
Domains in SCOPe 2.04: d1uppk_
Chain 'L':
Compound: ribulose bisphosphate carboxylase small chain
Species: Spinacia oleracea [TaxId:3562]
Database cross-references and differences (RAF-indexed):
- Uniprot Q43832 (0-122)
  - conflict (1)
  - conflict (5-6)
  - conflict (8)
  - conflict (10)
  - conflict (108)
  - conflict (112)
Domains in SCOPe 2.04: d1uppl_
Heterogens: CA, CAP, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>1uppA (A:)
mspqtetkasvefkagvkdykltyytpeyetldtdilaafrvspqpgvppeeagaavaae
sstgtwttvwtdgltnldrykgrcyhiepvageenqyicyvaypldlfeegsvtnmftsi
vgnvfgfkalralrledlripvayvktfqgpphgiqverdklnkygrpllgctikpklgl
saknygravyeclrggldftkddenvnsqpfmrwrdrflfcaealykaqaetgeikghyl
natagtcedmmkravfarelgvpivmhdyltggftanttlshycrdnglllhihramhav
idrqknhgmhfrvlakalrlsggdhihsgtvvgklegerditlgfvdllrddytekdrsr
giyftqswvstpgvlpvasggihvwhmpalteifgddsvlqfgggtlghpwgnapgavan
rvaleacvqarnegrdlaregntiireatkwspelaaacevwkeikfefpamdtv

Sequence, based on observed residues (ATOM records): (download)

>1uppA (A:)
asvefkagvkdykltyytpeyetldtdilaafrvspqpgvppeeagaavaaesstgtwtt
vwtdgltnldrykgrcyhiepvageenqyicyvaypldlfeegsvtnmftsivgnvfgfk
alralrledlripvayvktfqgpphgiqverdklnkygrpllgctikpklglsaknygra
vyeclrggldftkddenvnsqpfmrwrdrflfcaealykaqaetgeikghylnatagtce
dmmkravfarelgvpivmhdyltggftanttlshycrdnglllhihramhavidrqknhg
mhfrvlakalrlsggdhihsgtvvgklegerditlgfvdllrddytekdrsrgiyftqsw
vstpgvlpvasggihvwhmpalteifgddsvlqfgggtlghpwgnapgavanrvaleacv
qarnegrdlaregntiireatkwspelaaacevwkeikfefpamdtv

Chain 'C':
Sequence, based on SEQRES records: (download)

>1uppC (C:)
mspqtetkasvefkagvkdykltyytpeyetldtdilaafrvspqpgvppeeagaavaae
sstgtwttvwtdgltnldrykgrcyhiepvageenqyicyvaypldlfeegsvtnmftsi
vgnvfgfkalralrledlripvayvktfqgpphgiqverdklnkygrpllgctikpklgl
saknygravyeclrggldftkddenvnsqpfmrwrdrflfcaealykaqaetgeikghyl
natagtcedmmkravfarelgvpivmhdyltggftanttlshycrdnglllhihramhav
idrqknhgmhfrvlakalrlsggdhihsgtvvgklegerditlgfvdllrddytekdrsr
giyftqswvstpgvlpvasggihvwhmpalteifgddsvlqfgggtlghpwgnapgavan
rvaleacvqarnegrdlaregntiireatkwspelaaacevwkeikfefpamdtv

Sequence, based on observed residues (ATOM records): (download)

>1uppC (C:)
asvefkagvkdykltyytpeyetldtdilaafrvspqpgvppeeagaavaaesstgtwtt
vwtdgltnldrykgrcyhiepvageenqyicyvaypldlfeegsvtnmftsivgnvfgfk
alralrledlripvayvktfqgpphgiqverdklnkygrpllgctikpklglsaknygra
vyeclrggldftkddenvnsqpfmrwrdrflfcaealykaqaetgeikghylnatagtce
dmmkravfarelgvpivmhdyltggftanttlshycrdnglllhihramhavidrqknhg
mhfrvlakalrlsggdhihsgtvvgklegerditlgfvdllrddytekdrsrgiyftqsw
vstpgvlpvasggihvwhmpalteifgddsvlqfgggtlghpwgnapgavanrvaleacv
qarnegrdlaregntiireatkwspelaaacevwkeikfefpamdtv

Chain 'E':
Sequence, based on SEQRES records: (download)

>1uppE (E:)
mspqtetkasvefkagvkdykltyytpeyetldtdilaafrvspqpgvppeeagaavaae
sstgtwttvwtdgltnldrykgrcyhiepvageenqyicyvaypldlfeegsvtnmftsi
vgnvfgfkalralrledlripvayvktfqgpphgiqverdklnkygrpllgctikpklgl
saknygravyeclrggldftkddenvnsqpfmrwrdrflfcaealykaqaetgeikghyl
natagtcedmmkravfarelgvpivmhdyltggftanttlshycrdnglllhihramhav
idrqknhgmhfrvlakalrlsggdhihsgtvvgklegerditlgfvdllrddytekdrsr
giyftqswvstpgvlpvasggihvwhmpalteifgddsvlqfgggtlghpwgnapgavan
rvaleacvqarnegrdlaregntiireatkwspelaaacevwkeikfefpamdtv

Sequence, based on observed residues (ATOM records): (download)

>1uppE (E:)
asvefkagvkdykltyytpeyetldtdilaafrvspqpgvppeeagaavaaesstgtwtt
vwtdgltnldrykgrcyhiepvageenqyicyvaypldlfeegsvtnmftsivgnvfgfk
alralrledlripvayvktfqgpphgiqverdklnkygrpllgctikpklglsaknygra
vyeclrggldftkddenvnsqpfmrwrdrflfcaealykaqaetgeikghylnatagtce
dmmkravfarelgvpivmhdyltggftanttlshycrdnglllhihramhavidrqknhg
mhfrvlakalrlsggdhihsgtvvgklegerditlgfvdllrddytekdrsrgiyftqsw
vstpgvlpvasggihvwhmpalteifgddsvlqfgggtlghpwgnapgavanrvaleacv
qarnegrdlaregntiireatkwspelaaacevwkeikfefpamdtv

Chain 'G':
Sequence, based on SEQRES records: (download)

>1uppG (G:)
mspqtetkasvefkagvkdykltyytpeyetldtdilaafrvspqpgvppeeagaavaae
sstgtwttvwtdgltnldrykgrcyhiepvageenqyicyvaypldlfeegsvtnmftsi
vgnvfgfkalralrledlripvayvktfqgpphgiqverdklnkygrpllgctikpklgl
saknygravyeclrggldftkddenvnsqpfmrwrdrflfcaealykaqaetgeikghyl
natagtcedmmkravfarelgvpivmhdyltggftanttlshycrdnglllhihramhav
idrqknhgmhfrvlakalrlsggdhihsgtvvgklegerditlgfvdllrddytekdrsr
giyftqswvstpgvlpvasggihvwhmpalteifgddsvlqfgggtlghpwgnapgavan
rvaleacvqarnegrdlaregntiireatkwspelaaacevwkeikfefpamdtv

Sequence, based on observed residues (ATOM records): (download)

>1uppG (G:)
asvefkagvkdykltyytpeyetldtdilaafrvspqpgvppeeagaavaaesstgtwtt
vwtdgltnldrykgrcyhiepvageenqyicyvaypldlfeegsvtnmftsivgnvfgfk
alralrledlripvayvktfqgpphgiqverdklnkygrpllgctikpklglsaknygra
vyeclrggldftkddenvnsqpfmrwrdrflfcaealykaqaetgeikghylnatagtce
dmmkravfarelgvpivmhdyltggftanttlshycrdnglllhihramhavidrqknhg
mhfrvlakalrlsggdhihsgtvvgklegerditlgfvdllrddytekdrsrgiyftqsw
vstpgvlpvasggihvwhmpalteifgddsvlqfgggtlghpwgnapgavanrvaleacv
qarnegrdlaregntiireatkwspelaaacevwkeikfefpamdtv

Chain 'I':
Sequence; same for both SEQRES and ATOM records: (download)

>1uppI (I:)
mqvwpilnlkkyetlsylpplttdqlarqvdyllnnkwvpclefetdhgfvyrehhnspg
yydgrywtmwklpmfgctdpaqvlneleeckkeypnafiriigfdsnrevqcisfiaykp
agy

Chain 'J':
Sequence; same for both SEQRES and ATOM records: (download)

>1uppJ (J:)
mqvwpilnlkkyetlsylpplttdqlarqvdyllnnkwvpclefetdhgfvyrehhnspg
yydgrywtmwklpmfgctdpaqvlneleeckkeypnafiriigfdsnrevqcisfiaykp
agy

Chain 'K':
Sequence; same for both SEQRES and ATOM records: (download)

>1uppK (K:)
mqvwpilnlkkyetlsylpplttdqlarqvdyllnnkwvpclefetdhgfvyrehhnspg
yydgrywtmwklpmfgctdpaqvlneleeckkeypnafiriigfdsnrevqcisfiaykp
agy

Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)

>1uppL (L:)
mqvwpilnlkkyetlsylpplttdqlarqvdyllnnkwvpclefetdhgfvyrehhnspg
yydgrywtmwklpmfgctdpaqvlneleeckkeypnafiriigfdsnrevqcisfiaykp
agy