PDB entry 1upm

View 1upm on RCSB PDB site
Description: activated spinach rubisco complexed with 2-carboxyarabinitol 2 bisphosphat and ca2+.
Class: lyase
Keywords: lyase, carbon-carbon, oxidoreductase, photosynthesis, carbon-dioxide fixation lyase (carbon-carbon)
Deposited on 2003-10-08, released 2003-10-14
The last revision prior to the SCOPe 2.01 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.23
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'B':
    Compound: ribulose bisphosphate carboxylase large chain
    Species: Spinacia oleracea [TaxId:3562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: ribulose bisphosphate carboxylase small chain
    Species: Spinacia oleracea [TaxId:3562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q43832 (0-122)
      • conflict (1)
      • conflict (5-6)
      • conflict (8)
      • conflict (10)
      • conflict (108)
      • conflict (112)
    Domains in SCOPe 2.01: d1upmc_
  • Chain 'E':
    Compound: ribulose bisphosphate carboxylase large chain
    Species: Spinacia oleracea [TaxId:3562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: ribulose bisphosphate carboxylase small chain
    Species: Spinacia oleracea [TaxId:3562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q43832 (0-122)
      • conflict (1)
      • conflict (5-6)
      • conflict (8)
      • conflict (10)
      • conflict (108)
      • conflict (112)
    Domains in SCOPe 2.01: d1upmf_
  • Chain 'H':
    Compound: ribulose bisphosphate carboxylase large chain
    Species: Spinacia oleracea [TaxId:3562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: ribulose bisphosphate carboxylase small chain
    Species: Spinacia oleracea [TaxId:3562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q43832 (0-122)
      • conflict (1)
      • conflict (5-6)
      • conflict (8)
      • conflict (10)
      • conflict (108)
      • conflict (112)
    Domains in SCOPe 2.01: d1upmi_
  • Chain 'K':
    Compound: ribulose bisphosphate carboxylase large chain
    Species: Spinacia oleracea [TaxId:3562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: ribulose bisphosphate carboxylase large chain
    Species: Spinacia oleracea [TaxId:3562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: ribulose bisphosphate carboxylase small chain
    Species: Spinacia oleracea [TaxId:3562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q43832 (0-122)
      • conflict (1)
      • conflict (5-6)
      • conflict (8)
      • conflict (10)
      • conflict (108)
      • conflict (112)
    Domains in SCOPe 2.01: d1upmm_
  • Chain 'O':
    Compound: ribulose bisphosphate carboxylase large chain
    Species: Spinacia oleracea [TaxId:3562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: ribulose bisphosphate carboxylase small chain
    Species: Spinacia oleracea [TaxId:3562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q43832 (0-122)
      • conflict (1)
      • conflict (5-6)
      • conflict (8)
      • conflict (10)
      • conflict (108)
      • conflict (112)
    Domains in SCOPe 2.01: d1upmp_
  • Chain 'R':
    Compound: ribulose bisphosphate carboxylase large chain
    Species: Spinacia oleracea [TaxId:3562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: ribulose bisphosphate carboxylase small chain
    Species: Spinacia oleracea [TaxId:3562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q43832 (0-122)
      • conflict (1)
      • conflict (5-6)
      • conflict (8)
      • conflict (10)
      • conflict (108)
      • conflict (112)
    Domains in SCOPe 2.01: d1upms_
  • Chain 'T':
    Compound: ribulose bisphosphate carboxylase small chain
    Species: Spinacia oleracea [TaxId:3562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q43832 (0-122)
      • conflict (1)
      • conflict (5-6)
      • conflict (8)
      • conflict (10)
      • conflict (108)
      • conflict (112)
    Domains in SCOPe 2.01: d1upmt_
  • Chain 'V':
    Compound: ribulose bisphosphate carboxylase large chain
    Species: Spinacia oleracea [TaxId:3562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'W':
    Compound: ribulose bisphosphate carboxylase small chain
    Species: Spinacia oleracea [TaxId:3562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q43832 (0-122)
      • conflict (1)
      • conflict (5-6)
      • conflict (8)
      • conflict (10)
      • conflict (108)
      • conflict (112)
    Domains in SCOPe 2.01: d1upmw_
  • Heterogens: CA, CAP, HOH

PDB Chain Sequences:

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1upmC (C:)
    mqvwpilnlkkyetlsylpplttdqlarqvdyllnnkwvpclefetdhgfvyrehhnspg
    yydgrywtmwklpmfgctdpaqvlneleeckkeypnafiriigfdsnrevqcisfiaykp
    agy
    

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1upmF (F:)
    mqvwpilnlkkyetlsylpplttdqlarqvdyllnnkwvpclefetdhgfvyrehhnspg
    yydgrywtmwklpmfgctdpaqvlneleeckkeypnafiriigfdsnrevqcisfiaykp
    agy
    

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1upmI (I:)
    mqvwpilnlkkyetlsylpplttdqlarqvdyllnnkwvpclefetdhgfvyrehhnspg
    yydgrywtmwklpmfgctdpaqvlneleeckkeypnafiriigfdsnrevqcisfiaykp
    agy
    

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1upmM (M:)
    mqvwpilnlkkyetlsylpplttdqlarqvdyllnnkwvpclefetdhgfvyrehhnspg
    yydgrywtmwklpmfgctdpaqvlneleeckkeypnafiriigfdsnrevqcisfiaykp
    agy
    

  • Chain 'O':
    No sequence available.

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1upmP (P:)
    mqvwpilnlkkyetlsylpplttdqlarqvdyllnnkwvpclefetdhgfvyrehhnspg
    yydgrywtmwklpmfgctdpaqvlneleeckkeypnafiriigfdsnrevqcisfiaykp
    agy
    

  • Chain 'R':
    No sequence available.

  • Chain 'S':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1upmS (S:)
    mqvwpilnlkkyetlsylpplttdqlarqvdyllnnkwvpclefetdhgfvyrehhnspg
    yydgrywtmwklpmfgctdpaqvlneleeckkeypnafiriigfdsnrevqcisfiaykp
    agy
    

  • Chain 'T':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1upmT (T:)
    mqvwpilnlkkyetlsylpplttdqlarqvdyllnnkwvpclefetdhgfvyrehhnspg
    yydgrywtmwklpmfgctdpaqvlneleeckkeypnafiriigfdsnrevqcisfiaykp
    agy
    

  • Chain 'V':
    No sequence available.

  • Chain 'W':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1upmW (W:)
    mqvwpilnlkkyetlsylpplttdqlarqvdyllnnkwvpclefetdhgfvyrehhnspg
    yydgrywtmwklpmfgctdpaqvlneleeckkeypnafiriigfdsnrevqcisfiaykp
    agy