PDB entry 1um9

View 1um9 on RCSB PDB site
Description: branched-chain 2-oxo acid dehydrogenase (E1) from Thermus thermophilus HB8 in apo-form
Class: Oxidoreductase
Keywords: alpha(2)beta(2) tetramer, structural genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI
Deposited on 2003-09-25, released 2004-03-30
The last revision prior to the SCOP 1.73 freeze date was dated 2004-03-30, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.187
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 2-oxo acid dehydrogenase alpha subunit
    Species: Thermus thermophilus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1um9a_
  • Chain 'B':
    Compound: 2-oxo acid dehydrogenase beta subunit
    Species: Thermus thermophilus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1um9b1, d1um9b2
  • Chain 'C':
    Compound: 2-oxo acid dehydrogenase alpha subunit
    Species: Thermus thermophilus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1um9c_
  • Chain 'D':
    Compound: 2-oxo acid dehydrogenase beta subunit
    Species: Thermus thermophilus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1um9d1, d1um9d2
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1um9A (A:)
mvkethrfetfteepirligeegewlgdfpldlegeklrrlyrdmlaarmlderytilir
tgktsfiapaagheaaqvaiahairpgfdwvfpyyrdhglalalgiplkellgqmlatka
dpnkgrqmpehpgskalnfftvaspiashvppaagaaismkllrtgqvavctfgdgatse
gdwyaginfaavqgapavfiaennfyaisvdyrhqthsptiadkahafgipgylvdgmdv
lasyyvvkeaverarrgegpslvelrvyrygphssadddsryrpkeevafwrkkdpiprf
rrflearglwneeweedvreeiraelerglkeaeeagpvppewmfedvfaekpwhllrqe
allkeel

    Sequence, based on observed residues (ATOM records): (download) 
    >1um9A (A:)
hrfetfteepirligeegewlgdfpldlegeklrrlyrdmlaarmlderytilirtgkts
fiapaagheaaqvaiahairpgfdwvfpyyrdhglalalgiplkellgqmlatkadpnkg
rqmpehpgskalnfftvaspiashvppaagaaismkllrtgqvavctfgdgatsegdwya
ginfaavqgapavfiaennfptiadkahafgipgylvdgmdvlasyyvvkeaverarrge
gpslvelrvyrygphrkkdpiprfrrflearglwneeweedvreeiraelerglkeaeea
gpvppewmfedvfaekpwhllrqeallkeel

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1um9B (B:)
malmtmvqalnraldeemakdprvvvlgedvgkrggvflvtegllqkygpdrvmdtplse
aaivgaalgmaahglrpvaeiqfadyifpgfdqlvsqvaklryrsggqftaplvvrmpsg
ggvrgghhhsqspeahfvhtaglkvvavstpydakgllkaairdedpvvflepkrlyrsv
keevpeedytlpigkaalrregkdltlicygtvmpevlqaaaelakagvsaevldlrtlm
pwdyeavmnsvaktgrvvlvsdaprhasfvsevaatiaedlldmllappirvtgfdtpyp
yaqdklylptvtrilnaakraldy

    Sequence, based on observed residues (ATOM records): (download) 
    >1um9B (B:)
almtmvqalnraldeemakdprvvvlgedvgkrggvflvtegllqkygpdrvmdtplsea
aivgaalgmaahglrpvaeiqfadyifpgfdqlvsqvaklryrsggqftaplvvrmpsgg
gvrgghhhsqspeahfvhtaglkvvavstpydakgllkaairdedpvvflepkrlyrsvk
eevpeedytlpigkaalrregkdltlicygtvmpevlqaaaelakagvsaevldlrtlmp
wdyeavmnsvaktgrvvlvsdaprhasfvsevaatiaedlldmllappirvtgfdtpypy
aqdklylptvtrilnaakraldy

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1um9C (C:)
mvkethrfetfteepirligeegewlgdfpldlegeklrrlyrdmlaarmlderytilir
tgktsfiapaagheaaqvaiahairpgfdwvfpyyrdhglalalgiplkellgqmlatka
dpnkgrqmpehpgskalnfftvaspiashvppaagaaismkllrtgqvavctfgdgatse
gdwyaginfaavqgapavfiaennfyaisvdyrhqthsptiadkahafgipgylvdgmdv
lasyyvvkeaverarrgegpslvelrvyrygphssadddsryrpkeevafwrkkdpiprf
rrflearglwneeweedvreeiraelerglkeaeeagpvppewmfedvfaekpwhllrqe
allkeel

    Sequence, based on observed residues (ATOM records): (download) 
    >1um9C (C:)
rfetfteepirligeegewlgdfpldlegeklrrlyrdmlaarmlderytilirtgktsf
iapaagheaaqvaiahairpgfdwvfpyyrdhglalalgiplkellgqmlatkadpnkgr
qmpehpgskalnfftvaspiashvppaagaaismkllrtgqvavctfgdgatsegdwyag
infaavqgapavfiaennfptiadkahafgipgylvdgmdvlasyyvvkeaverarrgeg
pslvelrvyrygphssaddrkkdpiprfrrflearglwneeweedvreeiraelerglke
aeeagpvppewmfedvfaekpwhllrqeallkeel

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1um9D (D:)
malmtmvqalnraldeemakdprvvvlgedvgkrggvflvtegllqkygpdrvmdtplse
aaivgaalgmaahglrpvaeiqfadyifpgfdqlvsqvaklryrsggqftaplvvrmpsg
ggvrgghhhsqspeahfvhtaglkvvavstpydakgllkaairdedpvvflepkrlyrsv
keevpeedytlpigkaalrregkdltlicygtvmpevlqaaaelakagvsaevldlrtlm
pwdyeavmnsvaktgrvvlvsdaprhasfvsevaatiaedlldmllappirvtgfdtpyp
yaqdklylptvtrilnaakraldy

    Sequence, based on observed residues (ATOM records): (download) 
    >1um9D (D:)
almtmvqalnraldeemakdprvvvlgedvgkrggvflvtegllqkygpdrvmdtplsea
aivgaalgmaahglrpvaeiqfadyifpgfdqlvsqvaklryrsggqftaplvvrmpsgg
gvrgghhhsqspeahfvhtaglkvvavstpydakgllkaairdedpvvflepkrlyrsvk
eevpeedytlpigkaalrregkdltlicygtvmpevlqaaaelakagvsaevldlrtlmp
wdyeavmnsvaktgrvvlvsdaprhasfvsevaatiaedlldmllappirvtgfdtpypy
aqdklylptvtrilnaakraldy