PDB entry 1udy

View 1udy on RCSB PDB site
Description: Medium-Chain Acyl-CoA Dehydrogenase with 3-Thiaoctanoyl-CoA
Class: Oxidoreductase
Keywords: MCAD complex, Oxidoreductase
Deposited on 2003-05-07, released 2003-12-09
The last revision prior to the SCOPe 2.05 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.198
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Acyl-CoA dehydrogenase, medium-chain specific
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P41367
      • see remark 999 (14)
      • see remark 999 (257)
      • see remark 999 (279)
      • see remark 999 (305)
    Domains in SCOPe 2.05: d1udya1, d1udya2
  • Chain 'B':
    Compound: Acyl-CoA dehydrogenase, medium-chain specific
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P41367
      • see remark 999 (14)
      • see remark 999 (257)
      • see remark 999 (279)
      • see remark 999 (305)
    Domains in SCOPe 2.05: d1udyb1, d1udyb2
  • Chain 'C':
    Compound: Acyl-CoA dehydrogenase, medium-chain specific
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P41367
      • see remark 999 (14)
      • see remark 999 (257)
      • see remark 999 (279)
      • see remark 999 (305)
    Domains in SCOPe 2.05: d1udyc1, d1udyc2
  • Chain 'D':
    Compound: Acyl-CoA dehydrogenase, medium-chain specific
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P41367
      • see remark 999 (14)
      • see remark 999 (257)
      • see remark 999 (279)
      • see remark 999 (305)
    Domains in SCOPe 2.05: d1udyd1, d1udyd2
  • Heterogens: FAD, CS8, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1udyA (A:)
kavpqcepgsgfsfelteqqkefqatarkfareeiipvaaeydrtgeypvpllkrawelg
lmnthipesfgglglgiidscliteelaygctgvqtaieantlgqvpliiggnyqqqkky
lgrmteeplmcaycvtepgagsdvagiktkaekkgdeyiingqkmwitnggkanwyflla
rsdpdpkapaskaftgfiveadtpgvqigrkeinmgqrcsdtrgivfedvrvpkenvltg
egagfkiamgtfdktrppvaagavglaqraldeatkyalerktfgkllaehqgisfllad
mamkvelarlsyqraaweidsgrrntyyasiakayaadianqlatdavqvfggngfntey
pveklmrdakiyqiyegtaqiqriiiarehigrykn

    Sequence, based on observed residues (ATOM records): (download) 
    >1udyA (A:)
gfsfelteqqkefqatarkfareeiipvaaeydrtgeypvpllkrawelglmnthipesf
gglglgiidscliteelaygctgvqtaieantlgqvpliiggnyqqqkkylgrmteeplm
caycvtepgagsdvagiktkaekkgdeyiingqkmwitnggkanwyfllarsdpdpkapa
skaftgfiveadtpgvqigrkeinmgqrcsdtrgivfedvrvpkenvltgegagfkiamg
tfdktrppvaagavglaqraldeatkyalerktfgkllaehqgisflladmamkvelarl
syqraaweidsgrrntyyasiakayaadianqlatdavqvfggngfnteypveklmrdak
iyqiyegtaqiqriiiarehigryk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1udyB (B:)
kavpqcepgsgfsfelteqqkefqatarkfareeiipvaaeydrtgeypvpllkrawelg
lmnthipesfgglglgiidscliteelaygctgvqtaieantlgqvpliiggnyqqqkky
lgrmteeplmcaycvtepgagsdvagiktkaekkgdeyiingqkmwitnggkanwyflla
rsdpdpkapaskaftgfiveadtpgvqigrkeinmgqrcsdtrgivfedvrvpkenvltg
egagfkiamgtfdktrppvaagavglaqraldeatkyalerktfgkllaehqgisfllad
mamkvelarlsyqraaweidsgrrntyyasiakayaadianqlatdavqvfggngfntey
pveklmrdakiyqiyegtaqiqriiiarehigrykn

    Sequence, based on observed residues (ATOM records): (download) 
    >1udyB (B:)
gfsfelteqqkefqatarkfareeiipvaaeydrtgeypvpllkrawelglmnthipesf
gglglgiidscliteelaygctgvqtaieantlgqvpliiggnyqqqkkylgrmteeplm
caycvtepgagsdvagiktkaekkgdeyiingqkmwitnggkanwyfllarsdpdpkapa
skaftgfiveadtpgvqigrkeinmgqrcsdtrgivfedvrvpkenvltgegagfkiamg
tfdktrppvaagavglaqraldeatkyalerktfgkllaehqgisflladmamkvelarl
syqraaweidsgrrntyyasiakayaadianqlatdavqvfggngfnteypveklmrdak
iyqiyegtaqiqriiiarehigr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1udyC (C:)
kavpqcepgsgfsfelteqqkefqatarkfareeiipvaaeydrtgeypvpllkrawelg
lmnthipesfgglglgiidscliteelaygctgvqtaieantlgqvpliiggnyqqqkky
lgrmteeplmcaycvtepgagsdvagiktkaekkgdeyiingqkmwitnggkanwyflla
rsdpdpkapaskaftgfiveadtpgvqigrkeinmgqrcsdtrgivfedvrvpkenvltg
egagfkiamgtfdktrppvaagavglaqraldeatkyalerktfgkllaehqgisfllad
mamkvelarlsyqraaweidsgrrntyyasiakayaadianqlatdavqvfggngfntey
pveklmrdakiyqiyegtaqiqriiiarehigrykn

    Sequence, based on observed residues (ATOM records): (download) 
    >1udyC (C:)
gfsfelteqqkefqatarkfareeiipvaaeydrtgeypvpllkrawelglmnthipesf
gglglgiidscliteelaygctgvqtaieantlgqvpliiggnyqqqkkylgrmteeplm
caycvtepgagsdvagiktkaekkgdeyiingqkmwitnggkanwyfllarsdpdpkapa
skaftgfiveadtpgvqigrkeinmgqrcsdtrgivfedvrvpkenvltgegagfkiamg
tfdktrppvaagavglaqraldeatkyalerktfgkllaehqgisflladmamkvelarl
syqraaweidsgrrntyyasiakayaadianqlatdavqvfggngfnteypveklmrdak
iyqiyegtaqiqriiiarehigryk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1udyD (D:)
kavpqcepgsgfsfelteqqkefqatarkfareeiipvaaeydrtgeypvpllkrawelg
lmnthipesfgglglgiidscliteelaygctgvqtaieantlgqvpliiggnyqqqkky
lgrmteeplmcaycvtepgagsdvagiktkaekkgdeyiingqkmwitnggkanwyflla
rsdpdpkapaskaftgfiveadtpgvqigrkeinmgqrcsdtrgivfedvrvpkenvltg
egagfkiamgtfdktrppvaagavglaqraldeatkyalerktfgkllaehqgisfllad
mamkvelarlsyqraaweidsgrrntyyasiakayaadianqlatdavqvfggngfntey
pveklmrdakiyqiyegtaqiqriiiarehigrykn

    Sequence, based on observed residues (ATOM records): (download) 
    >1udyD (D:)
gfsfelteqqkefqatarkfareeiipvaaeydrtgeypvpllkrawelglmnthipesf
gglglgiidscliteelaygctgvqtaieantlgqvpliiggnyqqqkkylgrmteeplm
caycvtepgagsdvagiktkaekkgdeyiingqkmwitnggkanwyfllarsdpdpkapa
skaftgfiveadtpgvqigrkeinmgqrcsdtrgivfedvrvpkenvltgegagfkiamg
tfdktrppvaagavglaqraldeatkyalerktfgkllaehqgisflladmamkvelarl
syqraaweidsgrrntyyasiakayaadianqlatdavqvfggngfnteypveklmrdak
iyqiyegtaqiqriiiarehigryk