PDB entry 1sie

View 1sie on RCSB PDB site
Description: murine polyomavirus complexed with a disialylated oligosaccharide
Class: Virus
Keywords: COAT PROTEIN, Icosahedral virus, Virus
Deposited on 1995-12-12, released 1996-06-20
The last revision prior to the SCOPe 2.04 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 3.65 Å
R-factor: 0.244
AEROSPACI score: 0.06 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: polyomavirus coat protein vp1
    Species: Mouse polyomavirus (strain p16 small-plaque) [TaxId:47935]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1siea_
  • Chain 'B':
    Compound: polyomavirus coat protein vp1
    Species: Mouse polyomavirus (strain p16 small-plaque) [TaxId:47935]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1sieb_
  • Chain 'C':
    Compound: polyomavirus coat protein vp1
    Species: Mouse polyomavirus (strain p16 small-plaque) [TaxId:47935]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1siec_
  • Chain 'D':
    Compound: polyomavirus coat protein vp1
    Species: Mouse polyomavirus (strain p16 small-plaque) [TaxId:47935]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1sied_
  • Chain 'E':
    Compound: polyomavirus coat protein vp1
    Species: Mouse polyomavirus (strain p16 small-plaque) [TaxId:47935]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1siee_
  • Chain 'F':
    Compound: polyomavirus coat protein vp1
    Species: Mouse polyomavirus (strain p16 small-plaque) [TaxId:47935]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1sief_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1sieA (A:)
apkrkagvskcetkctkacprpapvpkllikggmevldlvtgpdsvteieaflnprmgqp
ptpeslteggqyygwsrginlatsdtedspgnntlptwsmaklqlpmlnedltcdtlqmw
eavsvktevvgsgslldvhgfnkptdtvntkgistpvegsqyhvfavggepldlqglvtd
artkykeegvvtiktitkkdmvnkdqvlnpiskakldkdgmypveiwhpdpaknentryf
gnytggtttppvlqftntlttvlldengvgplckgeglylscvdimgwrvtrnydvhhwr
glpryfkitlrkrwvknpypmaslisslfnnmlpqvqgqpmegentqveevrvydgtepv
pgdpdmtryvdrfgktktvfpgn

    Sequence, based on observed residues (ATOM records): (download) 
    >1sieA (A:)
kacprpapvpkllikggmevldlvtgpdsvteieaflnprmgqpptpeslteggqyygws
rginlatsdtedspgnntlptwsmaklqlpmlnedltcdtlqmweavsvktevvgsgsll
dvhgfnkptdtvntkgistpvegsqyhvfavggepldlqglvtdartkykeegvvtikti
tkkdmvnkdqvlnpiskakldkdgmypveiwhpdpaknentryfgnytggtttppvlqft
ntlttvlldengvgplckgeglylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvk
npypmaslisslfnnmlpqvqgqpmegentqveevrvydgtepvpgdpdmtryvdrfgkt
ktvfpg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1sieB (B:)
apkrkagvskcetkctkacprpapvpkllikggmevldlvtgpdsvteieaflnprmgqp
ptpeslteggqyygwsrginlatsdtedspgnntlptwsmaklqlpmlnedltcdtlqmw
eavsvktevvgsgslldvhgfnkptdtvntkgistpvegsqyhvfavggepldlqglvtd
artkykeegvvtiktitkkdmvnkdqvlnpiskakldkdgmypveiwhpdpaknentryf
gnytggtttppvlqftntlttvlldengvgplckgeglylscvdimgwrvtrnydvhhwr
glpryfkitlrkrwvknpypmaslisslfnnmlpqvqgqpmegentqveevrvydgtepv
pgdpdmtryvdrfgktktvfpgn

    Sequence, based on observed residues (ATOM records): (download) 
    >1sieB (B:)
kacprpapvpkllikggmevldlvtgpdsvteieaflnprmgqpptpeslteggqyygws
rginlatsdtedspgnntlptwsmaklqlpmlnedltcdtlqmweavsvktevvgsgsll
dvhgfnkptdtvntkgistpvegsqyhvfavggepldlqglvtdartkykeegvvtikti
tkkdmvnkdqvlnpiskakldkdgmypveiwhpdpaknentryfgnytggtttppvlqft
ntlttvlldengvgplckgeglylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvk
npypmaslisslfnnmlpqvqgqpmegentqveevrvydgtepvpgdpdmtryvdrfgkt
ktvfpgn

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1sieC (C:)
apkrkagvskcetkctkacprpapvpkllikggmevldlvtgpdsvteieaflnprmgqp
ptpeslteggqyygwsrginlatsdtedspgnntlptwsmaklqlpmlnedltcdtlqmw
eavsvktevvgsgslldvhgfnkptdtvntkgistpvegsqyhvfavggepldlqglvtd
artkykeegvvtiktitkkdmvnkdqvlnpiskakldkdgmypveiwhpdpaknentryf
gnytggtttppvlqftntlttvlldengvgplckgeglylscvdimgwrvtrnydvhhwr
glpryfkitlrkrwvknpypmaslisslfnnmlpqvqgqpmegentqveevrvydgtepv
pgdpdmtryvdrfgktktvfpgn

    Sequence, based on observed residues (ATOM records): (download) 
    >1sieC (C:)
kacprpapvpkllikggmevldlvtgpdsvteieaflnprmgqpptpeslteggqyygws
rginlatsdtedspgnntlptwsmaklqlpmlnedltcdtlqmweavsvktevvgsgsll
dvhgfnkptdtvntkgistpvegsqyhvfavggepldlqglvtdartkykeegvvtikti
tkkdmvnkdqvlnpiskakldkdgmypveiwhpdpaknentryfgnytggtttppvlqft
ntlttvlldengvgplckgeglylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvk
npypmaslisslfnnmlpqvqgqpmegentqveevrvydgtepvpgdpdmtryvdrf

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1sieD (D:)
apkrkagvskcetkctkacprpapvpkllikggmevldlvtgpdsvteieaflnprmgqp
ptpeslteggqyygwsrginlatsdtedspgnntlptwsmaklqlpmlnedltcdtlqmw
eavsvktevvgsgslldvhgfnkptdtvntkgistpvegsqyhvfavggepldlqglvtd
artkykeegvvtiktitkkdmvnkdqvlnpiskakldkdgmypveiwhpdpaknentryf
gnytggtttppvlqftntlttvlldengvgplckgeglylscvdimgwrvtrnydvhhwr
glpryfkitlrkrwvknpypmaslisslfnnmlpqvqgqpmegentqveevrvydgtepv
pgdpdmtryvdrfgktktvfpgn

    Sequence, based on observed residues (ATOM records): (download) 
    >1sieD (D:)
kacprpapvpkllikggmevldlvtgpdsvteieaflnprmgqpptpeslteggqyygws
rginlatsdtedspgnntlptwsmaklqlpmlnedltcdtlqmweavsvktevvgsgsll
dvhgfnkptdtvntkgistpvegsqyhvfavggepldlqglvtdartkykeegvvtikti
tkkdmvnkdqvlnpiskakldkdgmypveiwhpdpaknentryfgnytggtttppvlqft
ntlttvlldengvgplckgeglylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvk
npypmaslisslfnnmlpqvqgqpmegentqveevrvydg

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1sieE (E:)
apkrkagvskcetkctkacprpapvpkllikggmevldlvtgpdsvteieaflnprmgqp
ptpeslteggqyygwsrginlatsdtedspgnntlptwsmaklqlpmlnedltcdtlqmw
eavsvktevvgsgslldvhgfnkptdtvntkgistpvegsqyhvfavggepldlqglvtd
artkykeegvvtiktitkkdmvnkdqvlnpiskakldkdgmypveiwhpdpaknentryf
gnytggtttppvlqftntlttvlldengvgplckgeglylscvdimgwrvtrnydvhhwr
glpryfkitlrkrwvknpypmaslisslfnnmlpqvqgqpmegentqveevrvydgtepv
pgdpdmtryvdrfgktktvfpgn

    Sequence, based on observed residues (ATOM records): (download) 
    >1sieE (E:)
kacprpapvpkllikggmevldlvtgpdsvteieaflnprmgqpptpeslteggqyygws
rginlatsdtedspgnntlptwsmaklqlpmlnedltcdtlqmweavsvktevvgsgsll
dvhgfnkptdtvntkgistpvegsqyhvfavggepldlqglvtdartkykeegvvtikti
tkkdmvnkdqvlnpiskakldkdgmypveiwhpdpaknentryfgnytggtttppvlqft
ntlttvlldengvgplckgeglylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvk
npypmaslisslfnnmlpqvqgqpmegentqveevrvydgtepvpgdpdmtryvdrfgkt
ktvfpgn

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1sieF (F:)
apkrkagvskcetkctkacprpapvpkllikggmevldlvtgpdsvteieaflnprmgqp
ptpeslteggqyygwsrginlatsdtedspgnntlptwsmaklqlpmlnedltcdtlqmw
eavsvktevvgsgslldvhgfnkptdtvntkgistpvegsqyhvfavggepldlqglvtd
artkykeegvvtiktitkkdmvnkdqvlnpiskakldkdgmypveiwhpdpaknentryf
gnytggtttppvlqftntlttvlldengvgplckgeglylscvdimgwrvtrnydvhhwr
glpryfkitlrkrwvknpypmaslisslfnnmlpqvqgqpmegentqveevrvydgtepv
pgdpdmtryvdrfgktktvfpgn

    Sequence, based on observed residues (ATOM records): (download) 
    >1sieF (F:)
acprpapvpkllikggmevldlvtgpdsvteieaflnprmgqpptpeslteggqyygwsr
ginlatsdtedspgnntlptwsmaklqlpmlnedltcdtlqmweavsvktevvgsgslld
vhgfnkptdtvntkgistpvegsqyhvfavggepldlqglvtdartkykeegvvtiktit
kkdmvnkdqvlnpiskakldkdgmypveiwhpdpaknentryfgnytggtttppvlqftn
tlttvlldengvgplckgeglylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvkn
pypmaslisslfnnmlpqvqgqpmegentqveevrvydgtepvpgdpdmtryvd