PDB entry 1rvf
View 1rvf on RCSB PDB site
Description: fab complexed with intact human rhinovirus
Class: Virus/Immune system
Keywords: POLYPROTEIN, COAT PROTEIN, CORE PROTEIN, RNA-DIRECTED RNA POLYMERASE, HYDROLASE, THIOL PROTEASE, MYRISTYLATION, COMPLEX (COAT PROTEIN/IMMUNOGLOBULIN), Icosahedral virus, Virus/Immune system COMPLEX
Deposited on
1996-09-05, released
1998-02-25
The last revision prior to the SCOPe 2.03 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-07.
Experiment type: XRAY
Resolution: 4 Å
R-factor: 0.212
AEROSPACI score: 0.04
(click here for full SPACI score report)
Chains and heterogens:
- Chain '1':
Compound: human rhinovirus 14 coat protein
Species: Human rhinovirus 14 [TaxId:12131]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d1rvf1_ - Chain '2':
Compound: human rhinovirus 14 coat protein
Species: Human rhinovirus 14 [TaxId:12131]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d1rvf.1 - Chain '3':
Compound: human rhinovirus 14 coat protein
Species: Human rhinovirus 14 [TaxId:12131]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d1rvf3_ - Chain '4':
Compound: human rhinovirus 14 coat protein
Species: Human rhinovirus sp. [TaxId:169066]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d1rvf.1 - Chain 'H':
Compound: fab 17-ia
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- PIR S38950 (0-118)
- conflict (1)
- conflict (8)
- conflict (15)
- conflict (27)
- conflict (29-34)
- conflict (42)
- conflict (49)
- conflict (54)
- conflict (56-57)
- conflict (61)
- conflict (71)
- conflict (73)
- conflict (76)
- conflict (82)
- conflict (98)
- insertion (100-101)
- conflict (102)
Domains in SCOPe 2.03: d1rvfh_ - Chain 'L':
Compound: fab 17-ia
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- EMBL CAA56279 (0-109)
- conflict (13-14)
- conflict (17)
- conflict (20)
- conflict (23)
- conflict (25)
- conflict (29)
- conflict (31)
- conflict (34)
- conflict (40)
- conflict (49)
- conflict (75)
- conflict (87)
- conflict (89-92)
- conflict (94)
- conflict (98)
Domains in SCOPe 2.03: d1rvfl_
PDB Chain Sequences:
- Chain '1':
Sequence, based on SEQRES records: (download)
>1rvf1 (1:)
glgdeleevivektkqtvasissgpkhtqkvpiltanetgatmpvlpsdsietrttymhf
ngsetdvecflgraacvhvteiqnkdatgidnhreaklfndwkinlsslvqlrkklelft
yvrfdseytilatasqpdsanyssnlvvqamyvppgapnpkewddytwqsasnpsvffkv
gdtsrfsvpyvglasayncfydgyshddaetqygitvlnhmgsmafrivnehdehktlvk
irvyhrakhveawiprapralpytsigrtnypkntepvikkrkgdiksy
Sequence, based on observed residues (ATOM records): (download)
>1rvf1 (1:)
tvasissgpkhtqkvpiltanetgatmpvlpsdsietrttymhfngsetdvecflgraac
vhvteiqnkdatgidnhreaklfndwkinlsslvqlrkklelftyvrfdseytilatasq
pdsanyssnlvvqamyvppgapnpkewddytwqsasnpsvffkvgdtsrfsvpyvglasa
yncfydgyshddaetqygitvlnhmgsmafrivnehdehktlvkirvyhrakhveawipr
apralpytsigrtnypkntepvikkrkgdiksy
- Chain '2':
Sequence, based on SEQRES records: (download)
>1rvf2 (2:)
spnveacgysdrvqqitlgnstittqeaanavvcyaewpeylpdvdasdvnktskpdtsv
crfytldsktwttgskgwcwklpdalkdmgvfgqnmffhslgrsgytvhvqcnatkfhsg
cllvvvipehqlasheggnvsvkytfthpgergidlssanevggpvkdvlynmngtllgn
llifphqfinlrtnntativipyinsvpidsmtrhnnvslmvipiapltvptgatpslpi
tvtiapmctefsgirsksivpq
Sequence, based on observed residues (ATOM records): (download)
>1rvf2 (2:)
gysdrvqqitlgnstittqeaanavvcyaewpeylpdvdasdvnktskpdtsvcrfytld
sktwttgskgwcwklpdalkdmgvfgqnmffhslgrsgytvhvqcnatkfhsgcllvvvi
pehqlasheggnvsvkytfthpgergidlssanevggpvkdvlynmngtllgnllifphq
finlrtnntativipyinsvpidsmtrhnnvslmvipiapltvptgatpslpitvtiapm
ctefsgirsksivpq
- Chain '3':
Sequence; same for both SEQRES and ATOM records: (download)
>1rvf3 (3:)
glptttlpgsgqflttddrqspsalpnyeptprihipgkvhnlleiiqvdtlipmnntht
kdevnsyliplnanrqneqvfgtnlfigdgvfkttllgeivqyythwsgslrfslmytgp
alssaklilaytppgargpqdrreamlgthvvwdiglqstivmtipwtsgvqfrytdpdt
ytsagflscwyqtslilppettgqvyllsfisacpdfklrlmkdtqtisqtvalte
- Chain '4':
Sequence, based on SEQRES records: (download)
>1rvf4 (4:)
gaqvstqksgshenqniltngsnqtftvinyykdaastssagqslsmdpskftepvkdlm
lkgapaln
Sequence, based on observed residues (ATOM records): (download)
>1rvf4 (4:)
inyykdaastssagqslsmdpskftepvkdlmlkgapaln
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>1rvfH (H:)
qgqlqqsgaelvrpgssvkisckasgyafssfwvnwvkqrpgqglewigqiypgdgdnky
ngkfkgkatltadkssttaymqlysltsedsavyfcarsgnypyamdywgqgtsvtvss
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>1rvfL (L:)
qivltqspaimsafpgekvtitcsatssvnymhwfqqkpgtspklwiysssnlasgvpar
fsgsgsgtsysltisrmeaedaatyycqqrssypitfgsgtkleikrada