PDB entry 1rtl
View 1rtl on RCSB PDB site
Description: crystal structure of hcv ns3 protease domain: ns4a peptide complex with covalently bound pyrrolidine-5,5-translactam inhibitor
Class: Viral protein complex
Keywords: viral protein, serine protease, nonstructural protein, cofactor peptide, helicase, inhibitor, translactam
Deposited on
2003-12-10, released
2004-12-14
The last revision prior to the SCOP 1.75 freeze date was dated
2004-12-14, with a file datestamp of
2007-06-04.
Experiment type: XRAY
Resolution: 2.75 Å
R-factor: 0.182
AEROSPACI score: 0.31
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: NS3 protease/helicase
Species: Hepatitis C virus
Gene: H STRAIN
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1rtl.1 - Chain 'B':
Compound: NS3 protease/helicase
Species: Hepatitis C virus
Gene: H STRAIN
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1rtl.2 - Chain 'C':
Compound: ns4a cofactor
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- GB CAB53095 (2-20)
- cloning artifact (1)
- cloning artifact (21)
Domains in SCOP 1.75: d1rtl.1 - Chain 'D':
Compound: ns4a cofactor
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1rtl.2 - Heterogens: ZN, CPX, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1rtlA (A:)
masmtggqqmgapitayaqqtrgllgciitsltgrdknqvegevqivstatqtflatcin
gvcwtvyhgagtrtiaspkgpviqmytnvdqdlvgwpapqgsrsltpctcgssdlylvtr
hadvipvrrrgdsrgsllsprpisylkgssggpllcpaghavglfraavctrgvtkavdf
ipvenlettmrsgshhhhhh
Sequence, based on observed residues (ATOM records): (download)
>1rtlA (A:)
apitayaqqtrgllgciitsltgrdknqvegevqivstatqtflatcingvcwtvyhgag
trtiaspkgpviqmytnvdqdlvgwpapqgsrsltpctcgssdlylvtrhadvipvrrrg
dsrgsllsprpisylkgssggpllcpaghavglfraavctrgvtkavdfipvenlettmr
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1rtlB (B:)
masmtggqqmgapitayaqqtrgllgciitsltgrdknqvegevqivstatqtflatcin
gvcwtvyhgagtrtiaspkgpviqmytnvdqdlvgwpapqgsrsltpctcgssdlylvtr
hadvipvrrrgdsrgsllsprpisylkgssggpllcpaghavglfraavctrgvtkavdf
ipvenlettmrsgshhhhhh
Sequence, based on observed residues (ATOM records): (download)
>1rtlB (B:)
qvegevqivstatqtflatcingvcwtvyhgagtrtiaspkgpviqmytnvdqdlvgwpa
pqgsrsltpctcgssdlylvtrhadvipvrrrgdsrgsllsprpisylkgssggpllcpa
ghavglfraavctrgvtkavdfipvenlettmr
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1rtlC (C:)
kkgsvvivgrivlsgkpaiipkk
Sequence, based on observed residues (ATOM records): (download)
>1rtlC (C:)
kgsvvivgrivlsgkpaiipk
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1rtlD (D:)
kkgsvvivgrivlsgkpaiipkk
Sequence, based on observed residues (ATOM records): (download)
>1rtlD (D:)
gsvvivgrivlsgkpa