PDB entry 1r8g
View 1r8g on RCSB PDB site
Description: Structure and function of YbdK
Class: ligase
Keywords: Structural Genomics, unknown function, YbdK, hypothetical protein, carboxylate-amine ligase, Structure 2 Function Project, S2F
Deposited on
2003-10-24, released
2004-08-17
The last revision prior to the SCOPe 2.04 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.189
AEROSPACI score: 0.39
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Hypothetical protein ybdK
Species: Escherichia coli [TaxId:562]
Gene: YBDK, B0581
Database cross-references and differences (RAF-indexed):
- Uniprot P77213
- modified residue (19)
- modified residue (35)
- modified residue (57)
- modified residue (78)
- modified residue (170)
- modified residue (194)
- modified residue (215)
- modified residue (240)
- modified residue (252)
- modified residue (347)
Domains in SCOPe 2.04: d1r8ga_ - Chain 'B':
Compound: Hypothetical protein ybdK
Species: Escherichia coli [TaxId:562]
Gene: YBDK, B0581
Database cross-references and differences (RAF-indexed):
- Uniprot P77213
- modified residue (19)
- modified residue (35)
- modified residue (57)
- modified residue (78)
- modified residue (170)
- modified residue (194)
- modified residue (215)
- modified residue (240)
- modified residue (252)
- modified residue (347)
Domains in SCOPe 2.04: d1r8gb_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1r8gA (A:)
mplpdfhvsepftlgielemqvvnppgydlsqdssmlidavknkitagevkhditesmle
latdvcrdinqaagqfsamqkvvlqaatdhhleicgggthpfqkwqrqevcdneryqrtl
enfgyliqqatvfgqhvhvgcasgddaiyllhglsrfvphfialsaaspymqgtdtrfas
srpnifsafpdngpmpwvsnwqqfealfrclsyttmidsikdlhwdirpsphfgtvevrv
mdtpltlshavnmagliqatahwllterpfkhqekdyllykfnrfqacryglegvitdph
tgdrrpltedtlrllekiapsahkigassaiealhrqvvsglneaqlmrdfvadggslig
lvkkhceiwagd
Sequence, based on observed residues (ATOM records): (download)
>1r8gA (A:)
lpdfhvsepftlgielemqvvnppgydlsqdssmlidavknkitagevkhditesmlela
tdvcrdinqaagqfsamqkvvlqaatdhhleicgggthpfqkwnfgyliqqatvfgqhvh
vgcasgddaiyllhglsrfvphfialsaaspymqgtdtrfassrpnifsafpdngpmpwv
snwqqfealfrclsyttmidsikdlhwdirpsphfgtvevrvmdtpltlshavnmagliq
atahwllterpfkhqekdyllykfnrfqacryglegvitdphtgdrrpltedtlrlleki
apsahkigassaiealhrqvvsglneaqlmrdfvadggsliglvkkhceiwa
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1r8gB (B:)
mplpdfhvsepftlgielemqvvnppgydlsqdssmlidavknkitagevkhditesmle
latdvcrdinqaagqfsamqkvvlqaatdhhleicgggthpfqkwqrqevcdneryqrtl
enfgyliqqatvfgqhvhvgcasgddaiyllhglsrfvphfialsaaspymqgtdtrfas
srpnifsafpdngpmpwvsnwqqfealfrclsyttmidsikdlhwdirpsphfgtvevrv
mdtpltlshavnmagliqatahwllterpfkhqekdyllykfnrfqacryglegvitdph
tgdrrpltedtlrllekiapsahkigassaiealhrqvvsglneaqlmrdfvadggslig
lvkkhceiwagd
Sequence, based on observed residues (ATOM records): (download)
>1r8gB (B:)
plpdfhvsepftlgielemqvvnppgydlsqdssmlidavknkitagevkhitesmlela
tdvcrdinqaagqfsamqkvvlqaatdhhleicgggthpfqkwqqrtlenfgyliqqatv
fgqhvhvgcasgddaiyllhglsrfvphfialsaaspymqgtdtrfassrpnifsafpdn
gpmpwvsnwqqfealfrclsyttmidsikdlhwdirpsphfgtvevrvmdtpltlshavn
magliqatahwllterpfkhqekdyllykfnrfqacryglegvitdphtgdrrpltedtl
rllekiapsahkigassaiealhrqvvsglneaqlmrdfvadggsliglvkkhceiwa