PDB entry 1r5i
View 1r5i on RCSB PDB site
Description: Crystal structure of the MAM-MHC complex
Class: immune system
Keywords: superantigen, MHC, MAM, complex, IMMUNE SYSTEM
Deposited on
2003-10-10, released
2004-03-16
The last revision prior to the SCOPe 2.05 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.238
AEROSPACI score: 0.26
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: hla class II histocompatibility antigen, dr alpha chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P01903 (0-180)
- modified residue (22)
- modified residue (35)
- modified residue (72)
Domains in SCOPe 2.05: d1r5ia1, d1r5ia2 - Chain 'B':
Compound: HLA class II histocompatibility antigen, DRB1-1 beta chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d1r5ib1, d1r5ib2 - Chain 'C':
Compound: Hemagglutinin peptide
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: Superantigen
Species: Mycoplasma arthritidis [TaxId:2111]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d1r5id_ - Chain 'E':
Compound: hla class II histocompatibility antigen, dr alpha chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P01903 (0-180)
- modified residue (22)
- modified residue (35)
- modified residue (72)
Domains in SCOPe 2.05: d1r5ie1, d1r5ie2 - Chain 'F':
Compound: HLA class II histocompatibility antigen, DRB1-1 beta chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d1r5if1, d1r5if2 - Chain 'G':
Compound: Hemagglutinin peptide
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: Superantigen
Species: Mycoplasma arthritidis [TaxId:2111]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d1r5ih_ - Heterogens: PO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1r5iA (A:)
ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
d
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1r5iB (B:)
gdtrprflwqlkfechffngtervrllerciynqeesvrfdsdvgeyravtelgrpdaey
wnsqkdlleqrraavdtycrhnygvgesftvqrrvepkvtvypsktqplqhhnllvcsvs
gfypgsievrwfrngqeekagvvstgliqngdwtfqtlvmletvprsgevytcqvehpsv
tspltvewra
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1r5iD (D:)
lgsmklrvenpkkaqkhfvqnlnnvvftnkelediynlsnkeetkevlklfklkvnqfyr
hafgivndynglleykeifnmmflklsvvfdtqrkeannveqikrniaildeimakadnd
lsyfisqnknfqelwdkavkltkemkiklkgqkldlrdgevainkvrelfgsdknvkelw
wfrsllvkgvylikryyegdielkttsdfakavfed
Sequence, based on observed residues (ATOM records): (download)
>1r5iD (D:)
smklrvenpkkaqkhfvqnlnnvvftnkelediynlsnkeetkevlklfklkvnqfyrha
fgivndynglleykeifnmmflklsvvfdtqrkeannveqikrniaildeimakadndls
yfisqnknfqelwdkavkltkemkiklkgqkldlrdgevainkvrelfgsdknvkelwwf
rsllvkgvylikryyegdielkttsdfakavfed
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>1r5iE (E:)
ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
d
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>1r5iF (F:)
gdtrprflwqlkfechffngtervrllerciynqeesvrfdsdvgeyravtelgrpdaey
wnsqkdlleqrraavdtycrhnygvgesftvqrrvepkvtvypsktqplqhhnllvcsvs
gfypgsievrwfrngqeekagvvstgliqngdwtfqtlvmletvprsgevytcqvehpsv
tspltvewra
- Chain 'G':
No sequence available.
- Chain 'H':
Sequence, based on SEQRES records: (download)
>1r5iH (H:)
lgsmklrvenpkkaqkhfvqnlnnvvftnkelediynlsnkeetkevlklfklkvnqfyr
hafgivndynglleykeifnmmflklsvvfdtqrkeannveqikrniaildeimakadnd
lsyfisqnknfqelwdkavkltkemkiklkgqkldlrdgevainkvrelfgsdknvkelw
wfrsllvkgvylikryyegdielkttsdfakavfed
Sequence, based on observed residues (ATOM records): (download)
>1r5iH (H:)
smklrvenpkkaqkhfvqnlnnvvftnkelediynlsnkeetkevlklfklkvnqfyrha
fgivndynglleykeifnmmflklsvvfdtqrkeannveqikrniaildeimakadndls
yfisqnknfqelwdkavkltkemkiklkgqkldlrdgevainkvrelfgsdknvkelwwf
rsllvkgvylikryyegdielkttsdfakavfed