PDB entry 1qo3
View 1qo3 on RCSB PDB site
Description: Complex between NK cell receptor Ly49A and its MHC class I ligand H-2Dd
Class: receptor/immune system
Keywords: RECEPTOR/IMMUNE SYSTEM, COMPLEX (NK RECEPTOR-MHC CLASS I), NK CELL, INHIBITORY RECEPTOR, MHC-I, C-TYPE LECTIN-LIKE, HISTOCOMPATIBILITY, B2M, LY49, LY-49, RECEPTOR-IMMUNE SYSTEM complex
Deposited on
1999-11-01, released
2000-01-02
The last revision prior to the SCOPe 2.05 freeze date was dated
2013-01-23, with a file datestamp of
2013-01-18.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.198
AEROSPACI score: 0.38
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: MHC class I h-2dd heavy chain
Species: Mus musculus [TaxId:10090]
Gene: H-2D
Database cross-references and differences (RAF-indexed):
- PDB 1QO3
- Uniprot P01900 (1-End)
Domains in SCOPe 2.05: d1qo3a1, d1qo3a2 - Chain 'B':
Compound: Beta-2-microglobulin
Species: MUS MUSCULUS [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- PDB 1QO3 (0-0)
- Uniprot P01887 (1-99)
Domains in SCOPe 2.05: d1qo3b_ - Chain 'C':
Compound: ly49a
Species: MUS MUSCULUS [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Uniprot P20937 (0-End)
- engineered mutation (0)
- variant (40)
- variant (97)
Domains in SCOPe 2.05: d1qo3c_ - Chain 'D':
Compound: ly49a
Species: MUS MUSCULUS [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Uniprot P20937
- variant (40)
- variant (97)
Domains in SCOPe 2.05: d1qo3d_ - Chain 'P':
Compound: hiv envelope glycoprotein 120 peptide
Species: HUMAN IMMUNODEFICIENCY VIRUS, synthetic [TaxId:12721]
Database cross-references and differences (RAF-indexed):
- Heterogens: EDO, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1qo3A (A:)
mshslryfvtavsrpgfgeprymevgyvdntefvrfdsdaenpryeprarwieqegpeyw
eretrrakgneqsfrvdlrtalryynqsaggshtlqwmagcdvesdgrllrgywqfaydg
cdyialnedlktwtaadmaaqitrrkweqagaaerdraylegecvewlrrylkngnatll
rtdppkahvthhrrpegdvtlrcwalgfypaditltwqlngeeltqemelvetrpagdgt
fqkwasvvvplgkeqkytchveheglpepltlrwgke
Sequence, based on observed residues (ATOM records): (download)
>1qo3A (A:)
shslryfvtavsrpgfgeprymevgyvdntefvrfdsdaenpryeprarwieqegpeywe
retrrakgneqsfrvdlrtalryynqsaggshtlqwmagcdvesdgrllrgywqfaydgc
dyialnedlktwtaadmaaqitrrkweqagaaerdraylegecvewlrrylkngnatllr
tdppkahvthhrrpegdvtlrcwalgfypaditltwqlngeeltqemelvetrpagdgtf
qkwasvvvplgkeqkytchveheglpepltlrwg
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1qo3B (B:)
miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
wsfyilahteftptetdtyacrvkhasmaepktvywdrdm
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1qo3C (C:)
stvldslqhtgrgdkvywfcygmkcyyfvmdrktwsgckqtcqssslsllkiddedelkf
lqlvvpsdscwvglsydnkkkdwawidnrpsklalntrkynirdggcmllsktrldngnc
dqvficicgkrldkfph
Sequence, based on observed residues (ATOM records): (download)
>1qo3C (C:)
stvldslqhkvywfcygmkcyyfvmdrktwsgckqtcqssslsllkiddedelkflqlvv
psdscwvglsydnkkkdwawidnrpsklalntrkynirdggcmllsktrldngncdqvfi
cicgkrld
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1qo3D (D:)
stvldslqhtgrgdkvywfcygmkcyyfvmdrktwsgckqtcqssslsllkiddedelkf
lqlvvpsdscwvglsydnkkkdwawidnrpsklalntrkynirdggcmllsktrldngnc
dqvficicgkrldkfph
Sequence, based on observed residues (ATOM records): (download)
>1qo3D (D:)
dkvywfcygmkcyyfvmdrktwsgckqtcqssslsllkiddedelkflqlvvpsdscwvg
lsydnkkkdwawidnrpsklalntrkynirdggcmllsktrldngncdqvficicgkrld
k
- Chain 'P':
No sequence available.