PDB entry 1qle
View 1qle on RCSB PDB site
Description: cryo-structure of the paracoccus denitrificans four-subunit cytochrome c oxidase in the completely oxidized state complexed with an antibody fv fragment
Class: oxidoreductase/immune system
Keywords: oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport, transmembrane, cytochrome oxidase, antibody complex
Deposited on
1999-08-30, released
1999-12-02
The last revision prior to the SCOPe 2.02 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.235
AEROSPACI score: 0.19
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: cytochrome c oxidase polypeptide I-beta
Species: Paracoccus denitrificans [TaxId:266]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1qlea_ - Chain 'B':
Compound: cytochrome c oxidase polypeptide II
Species: Paracoccus denitrificans [TaxId:266]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1qleb1, d1qleb2 - Chain 'C':
Compound: cytochrome c oxidase polypeptide III
Species: Paracoccus denitrificans [TaxId:266]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1qlec_ - Chain 'D':
Compound: ccytochrome c oxidase
Species: Paracoccus denitrificans [TaxId:266]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1qled_ - Chain 'H':
Compound: heavy chain antibody fv fragment
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1qleh_ - Chain 'L':
Compound: light chain antibody fv fragment
Species: Mus musculus [TaxId:10090]
Domains in SCOPe 2.02: d1qlel_ - Heterogens: PC1, HEA, CUA, CU, CA, MN
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1qleA (A:)
gfftrwfmstnhkdigilylftagivglisvcftvymrmelqhpgvqymclegarliada
saectpnghlwnvmityhgvlmmffvvipalfggfgnyfmplhigapdmafprlnnlsyw
myvcgvalgvasllapggndqmgsgvgwvlypplstteagysmdlaifavhvsgassilg
ainiittflnmrapgmtlfkvplfawsvfitawlillslpvlagaitmllmdrnfgtqff
dpagggdpvlyqhilwffghpevyiiilpgfgiishvistfakkpifgylpmvlamaaig
ilgfvvwahhmytagmsltqqayfmlatmtiavptgikvfswiatmwggsiefktpmlwa
fgflflftvggvtgvvlsqapldrvyhdtyyvvahfhyvmslgavfgifagvyywigkms
grqypewagqlhfwmmfigsnliffpqhflgrqgmprryidypvefaywnnissigayis
fasflffigivfytlfagkrvnvpnywnehadtlewtlpspppehtfetlpkredwdr
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1qleB (B:)
qdvlgdlpvigkpvnggmnfqpassplahdqqwldhfvlyiitavtifvcllllicivrf
nrranpvparfthntpieviwtlvpvlilvaigafslpilfrsqempndpdlvikaighq
wywsyeypndgvafdalmlekealadagysedeyllatdnpvvvpvgkkvlvqvtatdvi
hawtipafavkqdavpgriaqlwfsvdqegvyfgqcselcginhaympivvkavsqekye
awlagakeefaa
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>1qleC (C:)
ahvknhdyqilppsiwpffgaigafvmltgavawmkgitffglpvegpwmfliglvgvly
vmfgwwadvvnegetgehtpvvriglqygfilfimsevmffvawfwafiknalypmgpds
pikdgvwppegivtfdpwhlplintlilllsgvavtwahhafvlegdrkttinglivavi
lgvcftglqayeyshaafgladtvyagafymatgfhgahviigtiflfvclirllkgqmt
qkqhvgfeaaawywhfvdvvwlflfvviyiwgr
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>1qleD (D:)
tdhkhgemdirhqqatfagfikgatwvsilsiavlvflalans
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>1qleH (H:)
evklqesggdlvqpggslklscaasgftfssytmswvrqtpekrlewvasinngggrtyy
pdtvkgrftisrdnakntlylqmsslksedtamyycvrheyyyamdywgqgttvtvssa
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>1qleL (L:)
dieltqtpvslsasvgetvtitcraseniysylawyqqkqgkspqflvynaktlgegvps
rfsgsgsgtqfslkinsllpedfgsyycqhhygtppltfgggtkleik