PDB entry 1q9r
View 1q9r on RCSB PDB site
Description: S25-2- a(2-8)Kdo disaccharide complex
Class: immune system
Keywords: antigen-binding fragment, Fab, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, Kdo, complex, IMMUNE SYSTEM
Deposited on
2003-08-25, released
2004-01-27
The last revision prior to the SCOPe 2.08 freeze date was dated
2011-08-17, with a file datestamp of
2011-08-12.
Experiment type: XRAY
Resolution: 1.45 Å
R-factor: 0.203
AEROSPACI score: 0.63
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: S25-2 Fab (IgG1k) light chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1q9ra3, d1q9ra4 - Chain 'B':
Compound: S25-2 Fab (IgG1k) heavy chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1q9rb3, d1q9rb4 - Heterogens: MG, ZN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1q9rA (A:)
divmsqspsslavsagekvtmsckssqsllnsrtrknylawyqqkpgqspklliywastr
esgvpdrftgsgsgtdftltitsvqaedlavyyckqsynlrtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrnec
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1q9rB (B:)
evklvesggglvqsggslrlscatsgftftdyymswvrqppgkalewlgfirnkangytt
eyspsvkgrftisrdnsqsilylqmntlraedsatyycardhdgyyerfsywgqgtlvtv
saakttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlq
sdlytlsssvtvpsstwpsetvtcnvahpasstkvdkkivpr