PDB entry 1q8m
View 1q8m on RCSB PDB site
Description: Crystal structure of the human myeloid cell activating receptor TREM-1
Class: immune system receptor
Keywords: V-type Ig-like domain, Immunoglobulin-like, IMMUNE SYSTEM RECEPTOR
Deposited on
2003-08-21, released
2003-12-09
The last revision prior to the SCOPe 2.02 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.201
AEROSPACI score: 0.28
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: triggering receptor expressed on myeloid cells 1
Species: Homo sapiens [TaxId:9606]
Gene: TREM1
Database cross-references and differences (RAF-indexed):
- Uniprot Q9NP99 (1-118)
- initiating met (0)
- cloning artifact (119-120)
Domains in SCOPe 2.02: d1q8ma_ - Chain 'B':
Compound: triggering receptor expressed on myeloid cells 1
Species: Homo sapiens [TaxId:9606]
Gene: TREM1
Database cross-references and differences (RAF-indexed):
- Uniprot Q9NP99 (1-118)
- initiating met (0)
- cloning artifact (119-120)
Domains in SCOPe 2.02: d1q8mb_ - Chain 'C':
Compound: triggering receptor expressed on myeloid cells 1
Species: Homo sapiens [TaxId:9606]
Gene: TREM1
Database cross-references and differences (RAF-indexed):
- Uniprot Q9NP99 (1-118)
- initiating met (0)
- cloning artifact (119-120)
Domains in SCOPe 2.02: d1q8mc_ - Chain 'D':
Compound: triggering receptor expressed on myeloid cells 1
Species: Homo sapiens [TaxId:9606]
Gene: TREM1
Database cross-references and differences (RAF-indexed):
- Uniprot Q9NP99 (1-118)
- initiating met (0)
- cloning artifact (119-120)
Domains in SCOPe 2.02: d1q8md_ - Heterogens: SO4, GSH, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1q8mA (A:)
melraatklteekyelkegqtldvkcdytlekfassqkawqiirdgempktlacterpsk
nshpvqvgriiledyhdhgllrvrmvnlqvedsglyqcviyqppkephmlfdrirlvvtl
ehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>1q8mA (A:)
melraatklteekyelkegqtldvkcdytlekfassqkawqiirdgempktlacterpsk
nshpvqvgriiledyhdhgllrvrmvnlqvedsglyqcviyqppkephmlfdrirlvvtl
e
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1q8mB (B:)
melraatklteekyelkegqtldvkcdytlekfassqkawqiirdgempktlacterpsk
nshpvqvgriiledyhdhgllrvrmvnlqvedsglyqcviyqppkephmlfdrirlvvtl
ehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>1q8mB (B:)
melraatklteekyelkegqtldvkcdytlekfassqkawqiirdgempktlacterpsk
nshpvqvgriiledyhdhgllrvrmvnlqvedsglyqcviyqppkephmlfdrirlvvtl
e
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1q8mC (C:)
melraatklteekyelkegqtldvkcdytlekfassqkawqiirdgempktlacterpsk
nshpvqvgriiledyhdhgllrvrmvnlqvedsglyqcviyqppkephmlfdrirlvvtl
ehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>1q8mC (C:)
melraatklteekyelkegqtldvkcdytlekfassqkawqiirdgempktlacterpsk
nshpvqvgriiledyhdhgllrvrmvnlqvedsglyqcviyqppkephmlfdrirlvvtl
e
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1q8mD (D:)
melraatklteekyelkegqtldvkcdytlekfassqkawqiirdgempktlacterpsk
nshpvqvgriiledyhdhgllrvrmvnlqvedsglyqcviyqppkephmlfdrirlvvtl
ehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>1q8mD (D:)
melraatklteekyelkegqtldvkcdytlekfassqkawqiirdgempktlacterpsk
nshpvqvgriiledyhdhgllrvrmvnlqvedsglyqcviyqppkephmlfdrirlvvtl
e