PDB entry 1q88

View 1q88 on RCSB PDB site
Description: Crystal structure of the C-domain of the T.vaginalis Inr binding protein, IBP39 (monoclinic form)
Class: DNA binding protein
Keywords: Initiator, core promoter, Inr, DNA BINDING PROTEIN
Deposited on 2003-08-20, released 2003-11-18
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.42 Å
R-factor: 0.19
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 39 kDa initiator binding protein
    Species: Trichomonas vaginalis [TaxId:5722]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1q88a_
  • Chain 'B':
    Compound: 39 kDa initiator binding protein
    Species: Trichomonas vaginalis [TaxId:5722]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q95VR4 (Start-214)
      • expression tag (215-218)
    Domains in SCOPe 2.06: d1q88b1, d1q88b2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1q88A (A:)
    pvntkrsngtkrvefpttkksmcignstpneqetfrakvdeiwfrltqktdgtvmrdfli
    ekaaeyfkqpeqpkqnaievisaimapqeeqtkskadlykflamfgpyetimlkiaslll
    isnnkghwltfdpqaeknannqrdsisgwfdqnepnclilktptgirkiwnkplieatgq
    ylmdengekydswdkyfemkpietyltayptfapmhhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >1q88A (A:)
    mcignstpneqetfrakvdeiwfrltqktdgtvmrdfliekaaeyfkqpeqpkqnaievi
    saimapqeeqtkskadlykflamfgpyetimlkiaslllisnnkghwltfdpqaeknann
    qrdsisgwfdqnepnclilktptgirkiwnkplieatgqylmdengekydswdkyfemkp
    iltayptfa
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1q88B (B:)
    pvntkrsngtkrvefpttkksmcignstpneqetfrakvdeiwfrltqktdgtvmrdfli
    ekaaeyfkqpeqpkqnaievisaimapqeeqtkskadlykflamfgpyetimlkiaslll
    isnnkghwltfdpqaeknannqrdsisgwfdqnepnclilktptgirkiwnkplieatgq
    ylmdengekydswdkyfemkpietyltayptfapmhhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >1q88B (B:)
    mcignstpneqetfrakvdeiwfrltqktdgtvmrdfliekaaeyfkqpeqpkqnaievi
    saimapqeeqtkskadlykflamfgpyetimlkiaslllisnnkghwltfdpqaeknann
    qrdsisgwfdqnepnclilktptgirkiwnkplieatgqylmdengekydswdkyfemkp
    ietyltayptfapmhhhh