PDB entry 1q88
View 1q88 on RCSB PDB site
Description: Crystal structure of the C-domain of the T.vaginalis Inr binding protein, IBP39 (monoclinic form)
Class: DNA binding protein
Keywords: Initiator, core promoter, Inr, DNA BINDING PROTEIN
Deposited on
2003-08-20, released
2003-11-18
The last revision prior to the SCOPe 2.06 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.42 Å
R-factor: 0.19
AEROSPACI score: 0.34
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: 39 kDa initiator binding protein
Species: Trichomonas vaginalis [TaxId:5722]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1q88a_ - Chain 'B':
Compound: 39 kDa initiator binding protein
Species: Trichomonas vaginalis [TaxId:5722]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1q88b1, d1q88b2 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1q88A (A:)
pvntkrsngtkrvefpttkksmcignstpneqetfrakvdeiwfrltqktdgtvmrdfli
ekaaeyfkqpeqpkqnaievisaimapqeeqtkskadlykflamfgpyetimlkiaslll
isnnkghwltfdpqaeknannqrdsisgwfdqnepnclilktptgirkiwnkplieatgq
ylmdengekydswdkyfemkpietyltayptfapmhhhhhh
Sequence, based on observed residues (ATOM records): (download)
>1q88A (A:)
mcignstpneqetfrakvdeiwfrltqktdgtvmrdfliekaaeyfkqpeqpkqnaievi
saimapqeeqtkskadlykflamfgpyetimlkiaslllisnnkghwltfdpqaeknann
qrdsisgwfdqnepnclilktptgirkiwnkplieatgqylmdengekydswdkyfemkp
iltayptfa
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1q88B (B:)
pvntkrsngtkrvefpttkksmcignstpneqetfrakvdeiwfrltqktdgtvmrdfli
ekaaeyfkqpeqpkqnaievisaimapqeeqtkskadlykflamfgpyetimlkiaslll
isnnkghwltfdpqaeknannqrdsisgwfdqnepnclilktptgirkiwnkplieatgq
ylmdengekydswdkyfemkpietyltayptfapmhhhhhh
Sequence, based on observed residues (ATOM records): (download)
>1q88B (B:)
mcignstpneqetfrakvdeiwfrltqktdgtvmrdfliekaaeyfkqpeqpkqnaievi
saimapqeeqtkskadlykflamfgpyetimlkiaslllisnnkghwltfdpqaeknann
qrdsisgwfdqnepnclilktptgirkiwnkplieatgqylmdengekydswdkyfemkp
ietyltayptfapmhhhh