PDB entry 1pz5
View 1pz5 on RCSB PDB site
Description: Structural basis of peptide-carbohydrate mimicry in an antibody combining site
Class: immune system
Keywords: Antibody-antigen structure, peptide-carbohydrate mimicry, vaccine design, IMMUNE SYSTEM
Deposited on
2003-07-09, released
2003-11-18
The last revision prior to the SCOPe 2.03 freeze date was dated
2011-11-16, with a file datestamp of
2011-11-11.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.219
AEROSPACI score: 0.48
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Light chain of Fab (SYA/J6)
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d1pz5a1, d1pz5a2 - Chain 'B':
Compound: Heavy chain of Fab (SYA/J6)
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d1pz5b1, d1pz5b2 - Chain 'C':
Compound: Octapeptide (MDWNMHAA)
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1pz5A (A:)
dvvltqtplslpvrlgdqasiscrssqsllhsdgntylhwylqkpgqspklliykvsnrf
sgvpdrfsgsgsgtdftlkisrveaedlgvyfcsqtthvptfgggtkleikradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfnr
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1pz5B (B:)
evkveesggglvqpggsmklscvasgftfsnywmewvrqspekglewvaeirlksnnyat
hyaesvkgrftisrddskssvylqmnnlraedtgiyyctrggavgamdywgqgtsvtvss
atttapsvyplvpgcsdtsgssvtlgclvkgyfpepvtvkwnygalssgvrtvssvlqsg
fyslsslvtvpsstwpsqtvicnvahpaskvdlikeisgp
- Chain 'C':
No sequence available.