PDB entry 1pyb

View 1pyb on RCSB PDB site
Description: Crystal Structure of Aquifex aeolicus Trbp111: a Stucture-Specific tRNA Binding Protein
Class: RNA binding protein
Keywords: oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA BINDING PROTEIN
Deposited on 2003-07-08, released 2003-08-05
The last revision prior to the SCOPe 2.05 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.208
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: methionyl-tRNA synthetase beta subunit
    Species: Aquifex aeolicus [TaxId:63363]
    Gene: metG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1pyba_
  • Chain 'B':
    Compound: methionyl-tRNA synthetase beta subunit
    Species: Aquifex aeolicus [TaxId:63363]
    Gene: metG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1pybb_
  • Chain 'C':
    Compound: methionyl-tRNA synthetase beta subunit
    Species: Aquifex aeolicus [TaxId:63363]
    Gene: metG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1pybc_
  • Chain 'D':
    Compound: methionyl-tRNA synthetase beta subunit
    Species: Aquifex aeolicus [TaxId:63363]
    Gene: metG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1pybd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1pybA (A:)
meekaligiedflkvdlrvakvlsaervegsekllkltlslgdeertvvagiakyytpee
lvgkkivivanlkprkifgiesqgmilaasdgenlsvivpdrdvkegakls

    Sequence, based on observed residues (ATOM records): (download) 
    >1pybA (A:)
aligiedflkvdlrvakvlsaervegsekllkltlslgdeertvvagiakyytpeelvgk
kivivanlkprkifgiesqgmilaasdgenlsvivpdrdvkegakls

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1pybB (B:)
meekaligiedflkvdlrvakvlsaervegsekllkltlslgdeertvvagiakyytpee
lvgkkivivanlkprkifgiesqgmilaasdgenlsvivpdrdvkegakls

    Sequence, based on observed residues (ATOM records): (download) 
    >1pybB (B:)
aligiedflkvdlrvakvlsaervegsekllkltlslgdeertvvagiakyytpeelvgk
kivivanlkprkifgiesqgmilaasdgenlsvivpdrdvkegakls

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1pybC (C:)
meekaligiedflkvdlrvakvlsaervegsekllkltlslgdeertvvagiakyytpee
lvgkkivivanlkprkifgiesqgmilaasdgenlsvivpdrdvkegakls

    Sequence, based on observed residues (ATOM records): (download) 
    >1pybC (C:)
aligiedflkvdlrvakvlsaervegsekllkltlslgdeertvvagiakyytpeelvgk
kivivanlkprkifgiesqgmilaasdgenlsvivpdrdvkegakls

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1pybD (D:)
meekaligiedflkvdlrvakvlsaervegsekllkltlslgdeertvvagiakyytpee
lvgkkivivanlkprkifgiesqgmilaasdgenlsvivpdrdvkegakls

    Sequence, based on observed residues (ATOM records): (download) 
    >1pybD (D:)
aligiedflkvdlrvakvlsaervegsekllkltlslgdeertvvagiakyytpeelvgk
kivivanlkprkifgiesqgmilaasdgenlsvivpdrdvkegakls