PDB entry 1psk
View 1psk on RCSB PDB site
Description: the crystal structure of an fab fragment that binds to the melanoma-associated gd2 ganglioside
Class: immunoglobulin
Keywords: fab, gd2-ganglioside, carbohydrate, melanoma, immunoglobulin
Deposited on
1997-03-03, released
1997-09-04
The last revision prior to the SCOPe 2.03 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.204
AEROSPACI score: 0.26
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'H':
Compound: antibody
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- EMBL CAA72329 (0-208)
- conflict (13)
- conflict (23)
- conflict (27)
- conflict (30)
- conflict (32)
- conflict (34)
- conflict (49)
- conflict (51-53)
- conflict (56)
- conflict (58)
- conflict (61)
- conflict (66)
- conflict (69)
- conflict (72-73)
- conflict (76)
- conflict (81-83)
- conflict (96-98)
- conflict (100)
- conflict (135)
Domains in SCOPe 2.03: d1pskh1, d1pskh2 - Chain 'L':
Compound: antibody
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d1pskl1, d1pskl2 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'H':
Sequence, based on SEQRES records: (download)
>1pskH (H:)
evqlqqsgpelvkpgasvkiscktsgytftkytmhwvkqshgkslewigdinpnnggtny
nqkfkgtatltvhkssttaymelrsltsedsavyyctsksfdywgqgttltvssakttap
svyplapvcgdttgsavtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdlytlss
svtvtsstwpsqsitcnvahpasstkvdk
Sequence, based on observed residues (ATOM records): (download)
>1pskH (H:)
evqlqqsgpelvkpgasvkiscktsgytftkytmhwvkqshgkslewigdinpnnggtny
nqkfkgtatltvhkssttaymelrsltsedsavyyctsksfdywgqgttltvssakttap
svyplapvavtlgclvkgyfpepvtltwnssgvhtfpavlqsdlytlsssvtvtsstwps
qsitcnvahpasstkvdk
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>1pskL (L:)
qivltqspaimsaspgekvtitcsasssvsnihwfqqkpgtfpklwiyststlasgvpgr
fsgsgsgtsysltisrmgaedaatyycqqrsgypftfgsgtkleikradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
tkdeyerhnsytceathktstspivksfnrnec