PDB entry 1prt

View 1prt on RCSB PDB site
Description: the crystal structure of pertussis toxin
Class: toxin
Keywords: toxin
Deposited on 1993-11-22, released 1995-01-26
The last revision prior to the SCOP 1.75 freeze date was dated 1995-01-26, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.195
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: pertussis toxin (subunit s1)
    Species: Bordetella pertussis
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1prta_
  • Chain 'B':
    Compound: pertussis toxin (subunit s2)
    Species: Bordetella pertussis
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1prtb1, d1prtb2
  • Chain 'C':
    Compound: pertussis toxin (subunit s3)
    Species: Bordetella pertussis
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1prtc1, d1prtc2
  • Chain 'D':
    Compound: pertussis toxin (subunit s4)
    Species: Bordetella pertussis
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1prtd_
  • Chain 'E':
    Compound: pertussis toxin (subunit s4)
    Species: Bordetella pertussis
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1prte_
  • Chain 'F':
    Compound: pertussis toxin (subunit s5)
    Species: Bordetella pertussis
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1prtf_
  • Chain 'G':
    Compound: pertussis toxin (subunit s1)
    Species: Bordetella pertussis
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1prtg_
  • Chain 'H':
    Compound: pertussis toxin (subunit s2)
    Species: Bordetella pertussis
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1prth1, d1prth2
  • Chain 'I':
    Compound: pertussis toxin (subunit s3)
    Species: Bordetella pertussis
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1prti1, d1prti2
  • Chain 'J':
    Compound: pertussis toxin (subunit s4)
    Species: Bordetella pertussis
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1prtj_
  • Chain 'K':
    Compound: pertussis toxin (subunit s4)
    Species: Bordetella pertussis
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1prtk_
  • Chain 'L':
    Compound: pertussis toxin (subunit s5)
    Species: Bordetella pertussis
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1prtl_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1prtA (A:)
dppatvyrydsrppedvfqngftawgnndnvlehltgrscqvgssnsafvstsssrryte
vylehrmqeaveaeragrgtghfigyiyevradnnfygaassyfeyvdtygdnagrilag
alatyqseylahrrippenirrvtrvyhngitgetttteysnaryvsqqtranpnpytsr
rsvasivgtlvrmapvvgacmarqaesseamaawserageamvlvyyesiaysf

    Sequence, based on observed residues (ATOM records): (download) 
    >1prtA (A:)
dppatvyrydsrppedvfqngftawgnndnvlehltgrscqvgssnsafvstsssrryte
vylehrmqeaveaeragrgtghfigyiyevradnnfygaassyfeyvdtygdnagrilag
alatyqseylahrrippenirrvtrvyhngitgetttteysnaryvsqqtranpnpytsr
rsvasivgtlvrmapvvgacmarqaesseeamvlvyyesiaysf

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1prtB (B:)
givippqeqitqhgspygrcanktraltvaelrgsgdlqeylrhvtrgwsifalydgtyl
ggeyggvikdgtpggafdlkttfcimttrntgqpatdhyysnvtatrllsstnsrlcavf
vrsgqpvigactspydgkywsmysrlrkmlyliyvagisvrvhvskeeqyydyedatfet
yaltgisicnpgsslc

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1prtC (C:)
givippkalftqqggaygrcpngtraltvaelrgnaelqtylrqitpgwsiyglydgtyl
gqayggiikdappgagfiyretfcittiyktgqpaadhyyskvtatrllastnsrlcavf
vrdgqsvigacaspyegryrdmydalrrllymiymsglavrvhvskeeqyydyedatfqt
yaltgislcnpaasic

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1prtD (D:)
dvpyvlvktnmvvtsvamkpyevtptrmlvcgiaaklgaaasspdahvpfcfgkdlkrpg
sspmevmlravfmqqrplrmflgpkqltfegkpalelirmvecsgkqdcp

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1prtE (E:)
dvpyvlvktnmvvtsvamkpyevtptrmlvcgiaaklgaaasspdahvpfcfgkdlkrpg
sspmevmlravfmqqrplrmflgpkqltfegkpalelirmvecsgkqdcp

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1prtF (F:)
lpthlyknftvqelalklkgknqefcltafmsgrslvraclsdaghehdtwfdtmlgfai
sayalksrialtvedspypgtpgdllelqicplngyce

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1prtG (G:)
dppatvyrydsrppedvfqngftawgnndnvlehltgrscqvgssnsafvstsssrryte
vylehrmqeaveaeragrgtghfigyiyevradnnfygaassyfeyvdtygdnagrilag
alatyqseylahrrippenirrvtrvyhngitgetttteysnaryvsqqtranpnpytsr
rsvasivgtlvrmapvvgacmarqaesseamaawserageamvlvyyesiaysf

    Sequence, based on observed residues (ATOM records): (download) 
    >1prtG (G:)
dppatvyrydsrppedvfqngftawgnndnvlehltgrscqvgssnsafvstsssrryte
vylehrmqeaveaeragrgtghfigyiyevradnnfygaassyfeyvdtygdnagrilag
alatyqseylahrrippenirrvtrvyhngitgetttteysnaryvsqqtranpnpytsr
rsvasivgtlvrmapvvgacmarqaesseeamvlvyyesiaysf

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1prtH (H:)
givippqeqitqhgspygrcanktraltvaelrgsgdlqeylrhvtrgwsifalydgtyl
ggeyggvikdgtpggafdlkttfcimttrntgqpatdhyysnvtatrllsstnsrlcavf
vrsgqpvigactspydgkywsmysrlrkmlyliyvagisvrvhvskeeqyydyedatfet
yaltgisicnpgsslc

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1prtI (I:)
givippkalftqqggaygrcpngtraltvaelrgnaelqtylrqitpgwsiyglydgtyl
gqayggiikdappgagfiyretfcittiyktgqpaadhyyskvtatrllastnsrlcavf
vrdgqsvigacaspyegryrdmydalrrllymiymsglavrvhvskeeqyydyedatfqt
yaltgislcnpaasic

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1prtJ (J:)
dvpyvlvktnmvvtsvamkpyevtptrmlvcgiaaklgaaasspdahvpfcfgkdlkrpg
sspmevmlravfmqqrplrmflgpkqltfegkpalelirmvecsgkqdcp

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1prtK (K:)
dvpyvlvktnmvvtsvamkpyevtptrmlvcgiaaklgaaasspdahvpfcfgkdlkrpg
sspmevmlravfmqqrplrmflgpkqltfegkpalelirmvecsgkqdcp

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1prtL (L:)
lpthlyknftvqelalklkgknqefcltafmsgrslvraclsdaghehdtwfdtmlgfai
sayalksrialtvedspypgtpgdllelqicplngyce