PDB entry 1pny

View 1pny on RCSB PDB site
Description: Crystal Structure of the Wild Type Ribosome from E. Coli, 50S Subunit of 70S Ribosome. THIS FILE, 1PNY, CONTAINS ONLY MOLECULES OF THE 50S RIBOSOMAL SUBUNIT. THE 30S SUBUNIT IS IN THE PDB FILE 1PNX.
Class: ribosome
Keywords: 50S ribosomal subunit, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, PROTEIN-RNA COMPLEX, RIBOSOME
Deposited on 2003-06-13, released 2003-07-15
The last revision prior to the SCOPe 2.06 freeze date was dated 2014-12-10, with a file datestamp of 2014-12-05.
Experiment type: XRAY
Resolution: 9.5 Å
R-factor: 0.389
AEROSPACI score: -0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '0':
    Compound: 23S ribosomal RNA
    Species: Escherichia coli [TaxId:562]
  • Chain '1':
    Compound: 50S ribosomal protein L33
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-52)
    Domains in SCOPe 2.06: d1pny1_
  • Chain '2':
    Compound: 50S ribosomal protein L34
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-45)
    Domains in SCOPe 2.06: d1pny2_
  • Chain '3':
    Compound: 50S ribosomal protein L35
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-62)
    Domains in SCOPe 2.06: d1pny3_
  • Chain '4':
    Compound: 50S ribosomal protein L36
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-34)
    Domains in SCOPe 2.06: d1pny4_
  • Chain '5':
    Compound: 50s ribosomal protein l1p
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-216)
    Domains in SCOPe 2.06: d1pny51, d1pny52
  • Chain '9':
    Compound: 5S ribosomal RNA
    Species: Escherichia coli [TaxId:562]
  • Chain 'A':
    Compound: 50S ribosomal protein L2
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-269)
    Domains in SCOPe 2.06: d1pnya_
  • Chain 'B':
    Compound: 50S ribosomal protein L3
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-204)
    Domains in SCOPe 2.06: d1pnyb_
  • Chain 'C':
    Compound: 50S ribosomal protein L4
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-196)
    Domains in SCOPe 2.06: d1pnyc_
  • Chain 'D':
    Compound: 50S ribosomal protein L5
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-177)
    Domains in SCOPe 2.06: d1pnyd_
  • Chain 'E':
    Compound: 50S ribosomal protein L6
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-176)
    Domains in SCOPe 2.06: d1pnye_
  • Chain 'F':
    Compound: 50S ribosomal protein L9
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-51)
    Domains in SCOPe 2.06: d1pnyf_
  • Chain 'G':
    Compound: 50S ribosomal protein L11
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-142)
    Domains in SCOPe 2.06: d1pnyg_
  • Chain 'H':
    Compound: 50S ribosomal protein L13
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-142)
    Domains in SCOPe 2.06: d1pnyh_
  • Chain 'I':
    Compound: 50S ribosomal protein L14
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-131)
    Domains in SCOPe 2.06: d1pnyi_
  • Chain 'J':
    Compound: 50S ribosomal protein L15
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-140)
    Domains in SCOPe 2.06: d1pnyj_
  • Chain 'K':
    Compound: 50S ribosomal protein L16
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-123)
    Domains in SCOPe 2.06: d1pnyk_
  • Chain 'L':
    Compound: 50S ribosomal protein L17
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-113)
    Domains in SCOPe 2.06: d1pnyl_
  • Chain 'M':
    Compound: 50S ribosomal protein L18
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-110)
    Domains in SCOPe 2.06: d1pnym_
  • Chain 'N':
    Compound: 50S ribosomal protein L19
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-124)
    Domains in SCOPe 2.06: d1pnyn_
  • Chain 'O':
    Compound: 50S ribosomal protein L20
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-116)
    Domains in SCOPe 2.06: d1pnyo_
  • Chain 'P':
    Compound: 50S ribosomal protein L21
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-99)
    Domains in SCOPe 2.06: d1pnyp_
  • Chain 'Q':
    Compound: 50S ribosomal protein L22
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-129)
    Domains in SCOPe 2.06: d1pnyq_
  • Chain 'R':
    Compound: 50S ribosomal protein L23
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-92)
    Domains in SCOPe 2.06: d1pnyr_
  • Chain 'S':
    Compound: 50S ribosomal protein L24
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-112)
    Domains in SCOPe 2.06: d1pnys_
  • Chain 'T':
    Compound: general stress protein ctc
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-172)
    Domains in SCOPe 2.06: d1pnyt_
  • Chain 'U':
    Compound: 50S ribosomal protein L27
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-85)
    Domains in SCOPe 2.06: d1pnyu_
  • Chain 'V':
    Compound: 50S ribosomal protein L28
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-15)
    Domains in SCOPe 2.06: d1pnyv_
  • Chain 'W':
    Compound: 50S ribosomal protein L29
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-64)
    Domains in SCOPe 2.06: d1pnyw_
  • Chain 'X':
    Compound: 50S ribosomal protein L30
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-54)
    Domains in SCOPe 2.06: d1pnyx_
  • Chain 'Y':
    Compound: 50S ribosomal protein L31
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-72)
    Domains in SCOPe 2.06: d1pnyy_
  • Chain 'Z':
    Compound: 50S ribosomal protein L32
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 1PNY (0-57)
    Domains in SCOPe 2.06: d1pnyz_

PDB Chain Sequences:

  • Chain '0':
    No sequence available.

  • Chain '1':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pny1 (1:)
akdgpriivkmessagtgfyytttknrrntqaklelkkydpvakkhvvfrekk

  • Chain '2':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pny2 (2:)
mkrtyqpnnrkrakthgfrarmktksgrnilarrrakgrhqltvsd

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pny3 (3:)
pkmkthkmakrrikitgtgkvmafksgkrhqntgksgdeirgkgkgfvlakaewarmklm
lpr

  • Chain '4':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pny4 (4:)
kvrssvkkmcdnckvvrrhgrvlvicsnvkhkqrq

  • Chain '5':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pny5 (5:)
mladkesliealklalsteynvkrnftqsveiiltfkgidmkkgdlklreivplpkqpsk
akrvlvvpsseqleyakkaspkvvitreelqklqgqkrpvkklarqnewflinqesmala
grilgpalgprgkfptplpntadiseyinrfkrsvlvktkdqpqvqvfigtedmkpedla
enaiavlnaienkakvetnlrniyvkttmgkavkvkr

  • Chain '9':
    No sequence available.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyA (A:)
kkyrpytpsrrqmttadfsgltkkrpekaltealpktggrnnrgritsrfiggghkrlyr
iidfkrrdksgvnakvaaieydpnrsariallhyadgekryilapegltvgatvnagpea
epklgnalplrfvpvgavvhalelvpgkgaqlarsagtsvqvqgkesdyvivrlpsgelr
rvhsecyatigavgnaehknivlgkagrsrwlgrkphqrgsamnpvdhphgggegrtgag
rvpvtpwgkptkglktrrkrktsdrfivtr

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyB (B:)
mkgilgtkigmtqiwkndraipvtvvlagpcpivqrktaqtdgyeavqigyapkaerkvn
kpmqghfakagvaptrilrefrgfapdgdsvnvdifaegekidatgtskgkgtqgvmkrw
nfaggpashgskkwhrrpgsigqrktpgrvykgkrmaghmgmervtvqnlevveiragen
lilvkgaipgangglvvlrsaakas

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyC (C:)
aqinvigqnggrtielplpevnsgvlhevvtwqlasrrrgtastrtraqvsktgrkmygq
kgtgnarhgdrsvptfvgggvafgpkprsydytlprqvrqlglamaiasrqeggklvavd
gfdiadaktknfiswakqngldgtekvllvtddentrraarnvswvsvlpvagvnvydil
rhdrlvidaaaleivee

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyD (D:)
qqlktkyndqvrpalmqqfgyssvmavpriekivvneglgsskedskaidkaakelalit
lqkpiitkakksisnfklrqgmpvgikvtlrgermyvflekliniglprirdfrginpna
fdgrgnynlgikeqlifpeitydmvdktrgmditivttaktdeearallqsmglpfrk

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyE (E:)
gkqpiavpsgvtvnaqdgvfkvkgpkgeltvpynteltvrqdgdqllverpsdaqkhral
hgltrtlvanavkgvsdgytinlelrgvgfrakltgkalemnigyshpviieppagvtfa
vpeptridvsgidkqlvgqvaanvrkvrkpdayhgkgvrfvgeqialkagkagatgg

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyF (F:)
mqvillepsrlgktgevvsvkdgyarnwlipqglavsatrtnmktleaqlrs

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyG (G:)
mkkvagivklqlpagkatpappvgpalgqyganimeftkafnaqtadkgdaiipveitiy
adrsftfitktppmsylirkaagigkgsstpnkakvgklnwdqvleiaktkmpdlnagsv
eaaantvagtarsmgvtveggpn

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyH (H:)
vktyipkndeqnwvvvdasgvplgrlatliasrirgkhrpdftpnmiqgdfvvvinaaqv
altgkklddkvytrytgyqgglktetarealskhperviehavfgmlpkgrqgramhtrl
kvyagethphsaqkpqvlktqpl

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyI (I:)
impqsrldvadnsgareimcirvlnsgiggkglttggggnkryahvgdiivasvkdaapr
gavkagdvvkavvvrtshaikradgstirfdrnaaviinnqgeprgtrvfgpvarelrdr
rfmkivslapev

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyJ (J:)
hdlkptpgsrkdrkrvgrgpggtdktagrghkgqksrsgagkgaffeggrsrliarlpkr
gfnnvgttyevvklsqlqdledttfdrdtleayrlvrrknrpvkllasgeisravtvhvd
aasaaaikaveaaggrvvlpe

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyK (K:)
tkfrkqfrgrmtgdakggdyvafgdygliamepawiksnqieacrivmsrhfrrggkiyi
rifpdkpvtkkpaetrmgkgkgaveywvsvvkpgrvmfevagvteeqakeafrlaghklp
iqtk

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyL (L:)
hgkagrklnrnssarvalaraqatallregriqttltkakelrpfveqlittakggdlhs
rrlvaqdihdkdvvrkvmdevapkyaerpggytrilrvgtrrgdgvtmalielv

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyM (M:)
attirrklrtrrkvrtttaasgrlrlsvyrsskhiyaqiiddsrgqtlaaassaalksgn
ktdtaaavgkalaaaaaekgikqvvfdrgsykyhgrvkaladaareggldf

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyN (N:)
qthikinrgellrgieqdhtrqlpdfrpgdtvrvdtkvregnrtrsqafegvviaingsg
srksftvrkisfgegvervfpfasplvnqvtivergkvrraklyylrelrgkaariksdr
srvmk

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyO (O:)
praktgivrrrrhkkvlkrakgfwgsrskqyrnafqtllnaatyeyrdrrnkkrdfrrlw
iqrinagarlhgmnystfinglkranidlnrkvladiaarepeafkalvdasrnarq

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyP (P:)
mfaiiqtggkqyrvsegdvirveslqgeagdkvelkalfvggeqtvfgedagkytvqaev
vehgrgkkiyirkyksgvqyrrrtghrqnftaikilgiqg

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyQ (Q:)
eqtfrnkkqrkqqvklrkpgfavakyvrmsprkvrlvvdvirgksvqdaedllrfiprsa
sepvakvlnsakanalhndemledrlfvkeayvdagptlkrliprargsaniikkrtshi
tiivaekgnk

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyR (R:)
shydilqapvisekaysamergvysfwvspkatkteikdaiqqafgvrvigistmnvpgk
rkrvgrfigqrndrkkaivrlaegqsiealagq

  • Chain 'S':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyS (S:)
prpsagshhndklhfkkgdtvivlsgkhkgqtgkvllalprdqkvvvegvnvitknvkps
mtnpqggqeqrelalhaskvalvdpetgkatrvrkqivdgkkvrvavasgkti

  • Chain 'T':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyT (T:)
meltakprtpkqkldesmiaavaynkennvsfaldrkafdrafrqqsttglfditvegge
tfpalvkavqmdkrkrapihvdfymvtygepvevsvpvhttgrsqgevqgglvdivvhnl
qivapgprripqelvvdvtkmnigdhitagdiklpegctlaadpeltvvsvlp

  • Chain 'U':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyU (U:)
ahkkgvgsskngrdsnpkylgvkkfggevvkagnilvrqrgtkfkagqgvgmgrdhtlfa
lsdgkvvfinkgkgarfisieaaqte

  • Chain 'V':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyV (V:)
xxxxxxxxxxxxxxxx

  • Chain 'W':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyW (W:)
kpsemrnlqatdfakeidarkkelmelrfqaaagqlaqphrvrqlrrevaqlntvkaela
rkgeq

  • Chain 'X':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyX (X:)
mkiklvrsvigrpgnqvktvqalglrkigdsrevsdtpavrgmvktvkhllevqe

  • Chain 'Y':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyY (Y:)
mqkdlhpkavpckiiyqgqvvmetmstrpeihvdvwsgvhpfwtgeerfldtegrvdkfn
krfgdsyrrgskk

  • Chain 'Z':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pnyZ (Z:)
akhpvpkkktskskrdmrrshhaltapnltecpqchgkklshhicpncgyydgrqvla