PDB entry 1ph4
View 1ph4 on RCSB PDB site
Description: crystal structure of the oxytricha nova telomere end-binding protein complexed with noncognate ssDNA ggggttttggcg
Class: DNA binding protein/DNA
Keywords: SINGLE STRAND DNA BINDING PROTEIN, PROTEIN DNA INTERACTIONS, SEQUENCE SPECIFICITY, NONCOGNATE, OLIGONUCLEOTIDE AND OLIGOSACCHARIDE BINDING FOLD, OB FOLD, TELOMERES, PROTEIN/DNA, DNA binding protein-DNA COMPLEX
Deposited on
2003-05-29, released
2003-06-17
The last revision prior to the SCOPe 2.06 freeze date was dated
2011-11-16, with a file datestamp of
2011-11-11.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.214
AEROSPACI score: 0.35
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Telomere-binding protein alpha subunit
Species: Sterkiella nova [TaxId:200597]
Gene: MAC-56A AND MAC-56K AND MAC-56S
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1ph4a1, d1ph4a2, d1ph4a3 - Chain 'B':
Compound: Telomere-binding protein beta subunit
Species: Sterkiella nova [TaxId:200597]
Gene: MAC-41A AND MAC-41S
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1ph4b_ - Chain 'D':
Compound: 5'-d(*gp*gp*gp*gp*tp*tp*tp*tp*gp*gp*cp*g)-3'
- Chain 'G':
Compound: 5'-d(*gp*gp*gp*gp*tp*tp*tp*tp*gp*gp*gp*gp*t)-3'
- Chain 'H':
Compound: 5'-d(*gp*gp*gp*gp*tp*tp*tp*tp*gp*gp*gp*gp*t)-3'
- Heterogens: NA, CL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1ph4A (A:)
yeyvelakasltsaqpqhfyavvidatfpyktnqeryicslkivdptlylkqqkgagdas
dyatlvlyakrfedlpiihragdiirvhratlrlyngqrqfnanvfyssswalfstdkrs
vtqeinnqdavsdttpfsfsskhatiekneisilqnlrkwanqyfssysvissdmytaln
kaqaqkgdfdvvakilqvheldeytnelklkdasgqvfytlslklkfphvrtgevvrirs
atydetstqkkvlilshysniitfiqssklakelrakiqddhsvevaslkknvslnavvl
tevdkkhaalpstslqdlfhhadsdkelqaqdtfrtqfyvtkiepsdvkewvkgydrktk
kssslkgasgkgdnifqvqflvkdastqlnnntyrvllytqdglganffnvkadnlhkna
darkkledsaelltkfnsyvdavverrngfylikdtkliy
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1ph4B (B:)
qqqsafkqlytelfnnegdfskvssnlkkplkcyvkesyphflvtdgyffvapyftkeav
nefhakfpnvnivdltdkvivinnwslelrrvnsaevftsyanlearlivhsfkpnlqer
lnptrypvnlfrddefkttiqhfrhtalqaainktvkgdnlvdiskvadaagkkgkvdag
ivkasaskgdefsdfsfkegntatlkiadifvqekg
- Chain 'D':
No sequence available.
- Chain 'G':
No sequence available.
- Chain 'H':
No sequence available.