PDB entry 1p4l

View 1p4l on RCSB PDB site
Description: Crystal structure of NK receptor Ly49C mutant with its MHC class I ligand H-2Kb
Class: immune system
Keywords: Natural Killer Receptor, MHC class I, Crystal Structure, C-type Lectin-like domain, IMMUNE SYSTEM
Deposited on 2003-04-23, released 2003-11-11
The last revision prior to the SCOPe 2.03 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.269
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: MHC class I h-2kb heavy chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-K
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p4la1, d1p4la2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p4lb_
  • Chain 'D':
    Compound: ly49-c
    Species: Mus musculus [TaxId:10090]
    Gene: KLRA3 OR LY49C OR LY-49C
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q64329 (0-121)
      • engineered (33)
      • engineered (55)
      • engineered (85)
    Domains in SCOPe 2.03: d1p4ld_
  • Chain 'P':
    Compound: Ovalbumin peptide
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1p4lA (A:)
    gphslryfvtavsrpglgeprymevgyvddtefvrfdsdaenpryeprarwmeqegpeyw
    eretqkakgneqsfrvdlrtllgyynqskggshtiqvisgcevgsdgrllrgyqqyaydg
    cdyialnedlktwtaadmaalitkhkweqageaerlraylegtcvewlrrylkngnatll
    rtdspkahvthhsrpedkvtlrcwalgfypaditltwqlngeeliqdmelvetrpagdgt
    fqkwasvvvplgkeqyytchvyhqglpepltlrw
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p4lA (A:)
    phslryfvtavsrpglgeprymevgyvddtefvrfdsdaenpryeprarwmeqegpeywe
    retqkakgneqsfrvdlrtllgyynqskggshtiqvisgcevgsdgrllrgyqqyaydgc
    dyialnedlktwtaadmaalitkhkweqageaerlraylegtcvewlrrylkngnatllr
    tdspkahvthhsrpedkvtlrcwalgfypaditltwqlngeeliqdmelvetrpagdgtf
    qkwasvvvplgkeqyytchvyhqglpepltlrw
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1p4lB (B:)
    iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
    sfyilahteftptetdtyacrvkhasmaepktvywdrdm
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1p4lD (D:)
    rgvkywfcystkcyyfimnkttwsgckancqhygvpilkiededelkflqrhvipgnywi
    glsydkkkkewawidngpskldmkikkmnfksrgcvflskariedidcnipyycicgkkl
    dk
    

  • Chain 'P':
    No sequence available.