PDB entry 1p3q

View 1p3q on RCSB PDB site
Description: Mechanism of Ubiquitin Recognition by the CUE Domain of VPS9
Class: translation
Keywords: Trafficking, Post Translational Modification, Mono-Ubiquitination
Deposited on 2003-04-18, released 2003-06-24
The last revision prior to the SCOPe 2.02 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.26
AEROSPACI score: -1.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'Q':
    Compound: Vacuolar protein sorting-associated protein VPS9
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: VPS9
    Database cross-references and differences (RAF-indexed):
    • Uniprot P54787 (0-End)
      • engineered (37-38)
    Domains in SCOPe 2.02: d1p3qq_
  • Chain 'R':
    Compound: Vacuolar protein sorting-associated protein VPS9
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: VPS9
    Database cross-references and differences (RAF-indexed):
    • Uniprot P54787 (Start-53)
      • engineered (37-38)
    Domains in SCOPe 2.02: d1p3qr_
  • Chain 'U':
    Compound: Ubiquitin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1p3qu_
  • Chain 'V':
    Compound: Ubiquitin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1p3qv_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'Q':
    Sequence, based on SEQRES records: (download) 
    >1p3qQ (Q:)
sslikkieenerkdtlntlqnmfpdmdpsliedvciaaasrigpcvdallslse

    Sequence, based on observed residues (ATOM records): (download) 
    >1p3qQ (Q:)
sslikkieenerkdtlntlqnmfpdmdpsliedvciaaasgpcvd

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >1p3qR (R:)
sslikkieenerkdtlntlqnmfpdmdpsliedvciaaasrigpcvdallslse

    Sequence, based on observed residues (ATOM records): (download) 
    >1p3qR (R:)
lqnmfpdmdpsliedvciaaasrigpcvdallslse

  • Chain 'U':
    Sequence, based on SEQRES records: (download) 
    >1p3qU (U:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >1p3qU (U:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlr

  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >1p3qV (V:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >1p3qV (V:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrl