PDB entry 1p3q

View 1p3q on RCSB PDB site
Description: Mechanism of Ubiquitin Recognition by the CUE Domain of VPS9
Class: translation
Keywords: Trafficking, Post Translational Modification, Mono-Ubiquitination
Deposited on 2003-04-18, released 2003-06-24
The last revision prior to the SCOP 1.73 freeze date was dated 2003-06-24, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.26
AEROSPACI score: -1.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'Q':
    Compound: Vacuolar protein sorting-associated protein VPS9
    Species: Saccharomyces cerevisiae
    Gene: VPS9
    Database cross-references and differences (RAF-indexed):
    • Uniprot P54787 (0-End)
      • modified residue (21)
      • modified residue (25)
      • engineered (37-38)
    Domains in SCOP 1.73: d1p3qq_
  • Chain 'R':
    Compound: Vacuolar protein sorting-associated protein VPS9
    Species: Saccharomyces cerevisiae
    Gene: VPS9
    Database cross-references and differences (RAF-indexed):
    • Uniprot P54787 (Start-53)
      • modified residue (21)
      • modified residue (25)
      • engineered (37-38)
    Domains in SCOP 1.73: d1p3qr_
  • Chain 'U':
    Compound: Ubiquitin
    Species: BOS TAURUS
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1p3qu_
  • Chain 'V':
    Compound: Ubiquitin
    Species: BOS TAURUS
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1p3qv_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'Q':
    Sequence, based on SEQRES records: (download)
    >1p3qQ (Q:)
    sslikkieenerkdtlntlqnmfpdmdpsliedvciaaasrigpcvdallslse
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p3qQ (Q:)
    sslikkieenerkdtlntlqnmfpdmdpsliedvciaaasgpcvd
    

  • Chain 'R':
    Sequence, based on SEQRES records: (download)
    >1p3qR (R:)
    sslikkieenerkdtlntlqnmfpdmdpsliedvciaaasrigpcvdallslse
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p3qR (R:)
    lqnmfpdmdpsliedvciaaasrigpcvdallslse
    

  • Chain 'U':
    Sequence, based on SEQRES records: (download)
    >1p3qU (U:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p3qU (U:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlr
    

  • Chain 'V':
    Sequence, based on SEQRES records: (download)
    >1p3qV (V:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p3qV (V:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrl