PDB entry 1p0y

View 1p0y on RCSB PDB site
Description: Crystal structure of the SET domain of LSMT bound to MeLysine and AdoHcy
Class: transferase
Keywords: set domain, lysine n-methylation, multiple methylation, photosynthesis, post-translational modification, transferase
Deposited on 2003-04-11, released 2003-07-01
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: 0.228
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast
    Species: Pisum sativum [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q43088 (Start-437)
      • engineered (438-441)
    Domains in SCOPe 2.07: d1p0ya1, d1p0ya2, d1p0ya3
  • Chain 'B':
    Compound: Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast
    Species: Pisum sativum [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q43088 (Start-437)
      • engineered (438-443)
    Domains in SCOPe 2.07: d1p0yb1, d1p0yb2, d1p0yb3
  • Chain 'C':
    Compound: Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast
    Species: Pisum sativum [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q43088 (Start-437)
      • engineered (438-442)
    Domains in SCOPe 2.07: d1p0yc1, d1p0yc2, d1p0yc3
  • Heterogens: SAH, MLZ, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1p0yA (A:)
mtepslspavqtfwkwlqeegvitaktpvkasvvteglglvalkdisrndvilqvpkrlw
inpdavaaseigrvcselkpwlsvilflirersredsvwkhyfgilpqetdstiywseee
lqelqgsqllkttvsvkeyvkneclkleqeiilpnkrlfpdpvtlddffwafgilrsraf
srlrnenlvvvpmadlinhsagvttedhayevkgaaglfswdylfslksplsvkageqvy
iqydlnksnaelaldygfiepnenrhaytltleisesdpffddkldvaesngfaqtayfd
ifynrtlppgllpylrlvalggtdaflleslfrdtiwghlelsvsrdneellckavreac
ksalagyhttieqdrelkegnldsrlaiavgiregekmvlqqidgifeqkeleldqleyy
qerrlkdlglcgengdilenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >1p0yA (A:)
slspavqtfwkwlqeegvitaktpvkasvvteglglvalkdisrndvilqvpkrlwinpd
avaaseigrvcselkpwlsvilflirersredsvwkhyfgilpqetdstiywseeelqel
qgsqllkttvsvkeyvkneclkleqeiilpnkrlfpdpvtlddffwafgilrsrafsrlr
nenlvvvpmadlinhsagvttedhayevkdylfslksplsvkageqvyiqydlnksnael
aldygfiepnenrhaytltleisesdpffddkldvaesngfaqtayfdifynrtlppgll
pylrlvalggtdaflleslfrdtiwghlelsvsrdneellckavreacksalagyhttie
qdrelkegnldsrlaiavgiregekmvlqqidgifeqkeleldqleyyqerrlkdlglcg
engdilenly

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1p0yB (B:)
mtepslspavqtfwkwlqeegvitaktpvkasvvteglglvalkdisrndvilqvpkrlw
inpdavaaseigrvcselkpwlsvilflirersredsvwkhyfgilpqetdstiywseee
lqelqgsqllkttvsvkeyvkneclkleqeiilpnkrlfpdpvtlddffwafgilrsraf
srlrnenlvvvpmadlinhsagvttedhayevkgaaglfswdylfslksplsvkageqvy
iqydlnksnaelaldygfiepnenrhaytltleisesdpffddkldvaesngfaqtayfd
ifynrtlppgllpylrlvalggtdaflleslfrdtiwghlelsvsrdneellckavreac
ksalagyhttieqdrelkegnldsrlaiavgiregekmvlqqidgifeqkeleldqleyy
qerrlkdlglcgengdilenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >1p0yB (B:)
pslspavqtfwkwlqeegvitaktpvkasvvteglglvalkdisrndvilqvpkrlwinp
davaaseigrvcselkpwlsvilflirersredsvwkhyfgilpqetdstiywseeelqe
lqgsqllkttvsvkeyvkneclkleqeiilpnkrlfpdpvtlddffwafgilrsrafsrl
rnenlvvvpmadlinhsagvttedhayevkgaaglfswdylfslksplsvkageqvyiqy
dlnksnaelaldygfiepnenrhaytltleisesdpffddkldvaesngfaqtayfdify
nrtlppgllpylrlvalggtdaflleslfrdtiwghlelsvsrdneellckavreacksa
lagyhttieqdrelkegnldsrlaiavgiregekmvlqqidgifeqkeleldqleyyqer
rlkdlglcgengdilenlyfq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1p0yC (C:)
mtepslspavqtfwkwlqeegvitaktpvkasvvteglglvalkdisrndvilqvpkrlw
inpdavaaseigrvcselkpwlsvilflirersredsvwkhyfgilpqetdstiywseee
lqelqgsqllkttvsvkeyvkneclkleqeiilpnkrlfpdpvtlddffwafgilrsraf
srlrnenlvvvpmadlinhsagvttedhayevkgaaglfswdylfslksplsvkageqvy
iqydlnksnaelaldygfiepnenrhaytltleisesdpffddkldvaesngfaqtayfd
ifynrtlppgllpylrlvalggtdaflleslfrdtiwghlelsvsrdneellckavreac
ksalagyhttieqdrelkegnldsrlaiavgiregekmvlqqidgifeqkeleldqleyy
qerrlkdlglcgengdilenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >1p0yC (C:)
slspavqtfwkwlqeegvitaktpvkasvvteglglvalkdisrndvilqvpkrlwinpd
avaaseigrvcselkpwlsvilflirersredsvwkhyfgilpqetdstiywseeelqel
qgsqllkttvsvkeyvkneclkleqeiilpnkrlfpdpvtlddffwafgilrsrafsrlr
nenlvvvpmadlinhsagvttedhayevkgaaglfswdylfslksplsvkageqvyiqyd
lnksnaelaldygfiepnenrhaytltleisesdpffddkldvaesngfaqtayfdifyn
rtlppgllpylrlvalggtdaflleslfrdtiwghlelsvsrdneellckavreacksal
agyhttieqdrelkegnldsrlaiavgiregekmvlqqidgifeqkeleldqleyyqerr
lkdlglcgengdilenlyf