PDB entry 1otc

View 1otc on RCSB PDB site
Description: the o. nova telomere end binding protein complexed with single strand DNA
Class: protein/DNA
Keywords: single strand DNA binding protein, protein DNA interactions, protein protein interactions, oligonucleotide and oligosaccharide binding fold, ob fold, telomeres, protein-DNA complex
Deposited on 1998-11-25, released 1999-04-12
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-04-04, with a file datestamp of 2018-03-29.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein (telomere-binding protein alpha subunit)
    Species: Sterkiella nova [TaxId:200597]
    Gene: MAC-56A
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1otca1, d1otca2, d1otca3
  • Chain 'B':
    Compound: protein (telomere-binding protein beta subunit)
    Species: Sterkiella nova [TaxId:200597]
    Gene: MAC-41A
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1otcb_
  • Chain 'D':
    Compound: DNA (5'-d(*gp*gp*gp*gp*tp*tp*tp*tp*gp*gp*gp*g)-3')
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1otcA (A:)
mstaakqnrstsrvskkktaapkegaakksdkghkyeyvelakasltsaqpqhfyavvid
atfpyktnqeryicslkivdptlylkqqkgagdasdyatlvlyakrfedlpiihragdii
rvhratlrlyngqrqfnanvfyssswalfstdkrsvtqeinnqdavsdttpfsfsskhat
iekneisilqnlrkwanqyfssysvissdmytalnkaqaqkgdfdvvakilqvheldeyt
nelklkdasgqvfytlslklkfphvrtgevvrirsatydetstqkkvlilshysniitfi
qssklakelrakiqddhsvevaslkknvslnavvltevdkkhaalpstslqdlfhhadsd
kelqaqdtfrtqfyvtkiepsdvkewvkgydrktkkssslkgasgkgdnifqvqflvkda
stqlnnntyrvllytqdglganffnvkadnlhknadarkkledsaelltkfnsyvdavve
rrngfylikdtkliy

    Sequence, based on observed residues (ATOM records): (download) 
    >1otcA (A:)
eyvelakasltsaqpqhfyavvidatfpyktnqeryicslkivdptlylkqqkgagdasd
yatlvlyakrfedlpiihragdiirvhratlrlyngqrqfnanvfyssswalfstdkrsv
tqeinnqdavsdttpfsfsskhatiekneisilqnlrkwanqyfssysvissdmytalnk
aqaqkgdfdvvakilqvheldeytnelklkdasgqvfytlslklkfphvrtgevvrirsa
tydetstqkkvlilshysniitfiqssklakelrakiqddhsvevaslkknvslnavvlt
evdkkhaalpstslqdlfhhadsdkelqaqdtfrtqfyvtkiepsdvkewvkgydrktkk
ssslkgasgkgdnifqvqflvkdastqlnnntyrvllytqdglganffnvkadnlhknad
arkkledsaelltkfnsyvdavverrngfylikdtkliy

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1otcB (B:)
mskgasapqqqsafkqlytelfnnegdfskvssnlkkplkcyvkesyphflvtdgyffva
pyftkeavnefhakfpnvnivdltdkvivinnwslelrrvnsaevftsyanlearlivhs
fkpnlqerlnptrypvnlfrddefkttiqhfrhtalqaainktvkgdnlvdiskvadaag
kkgkvdagivkasaskgdefsdfsfkegntatlkiadifvqekgkdalnkaadhtdgakv
kggakgkgkaaakaakgkkl

    Sequence, based on observed residues (ATOM records): (download) 
    >1otcB (B:)
qqsafkqlytelfnnegdfskvssnlkkplkcyvkesyphflvtdgyffvapyftkeavn
efhakfpnvnivdltdkvivinnwslelrrvnsaevftsyanlearlivhsfkpnlqerl
nptrypvnlfrddefkttiqhfrhtalqaainktvkgdnlvdiskvadaagkkgkvdagi
vkasaskgdefsdfsfkegntatlkiadifvqe

  • Chain 'D':
    No sequence available.