PDB entry 1oqx

View 1oqx on RCSB PDB site
Description: G-2 glycovariant of human IgG Fc bound to minimized version of Protein A called Z34C
Class: immune system
Keywords: Antibody, Glycosylation, Oligosaccharides, IgG, Peptide complex, Z34C, Protein A, IMMUNE SYSTEM
Deposited on 2003-03-11, released 2003-03-25
The last revision prior to the SCOPe 2.03 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.219
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: immunoglobulin gamma-1 heavy chain constant region
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • GB AAC82527 (0-End)
    Domains in SCOPe 2.03: d1oqxa1, d1oqxa2
  • Chain 'B':
    Compound: immunoglobulin gamma-1 heavy chain constant region
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • GB AAC82527 (0-End)
    Domains in SCOPe 2.03: d1oqxb1, d1oqxb2
  • Chain 'C':
    Compound: Protein A Z34C
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 1OQX (0-33)
    Domains in SCOPe 2.03: d1oqxc_
  • Chain 'D':
    Compound: Protein A Z34C
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 1OQX (0-33)
    Domains in SCOPe 2.03: d1oqxd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1oqxA (A:)
ggpsvflfppkpkdtlmisrtpevtcvvvdvshedpevkfnwyvdgvevhnaktkpreeq
ynstyrvvsvltvlhqdwlngkeykckvsnkalpapiektiskakgqprepqvytlppsr
deltknqvsltclvkgfypsdiavewesngqpennykttppvldsdgsfflyskltvdks
rwqqgnvfscsvmhealhnhytqkslslspgk

    Sequence, based on observed residues (ATOM records): (download) 
    >1oqxA (A:)
ggpsvflfppkpkdtlmisrtpevtcvvvdvshedpevkfnwyvdgvevhnaktkpreeq
ynstyrvvsvltvlhqdwlngkeykckvsnkalpapiektiskakgqprepqvytlppsr
deltknqvsltclvkgfypsdiavewesngqpennykttppvldsdgsfflyskltvdks
rwqqgnvfscsvmhealhnhytqkslslsp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1oqxB (B:)
ggpsvflfppkpkdtlmisrtpevtcvvvdvshedpevkfnwyvdgvevhnaktkpreeq
ynstyrvvsvltvlhqdwlngkeykckvsnkalpapiektiskakgqprepqvytlppsr
deltknqvsltclvkgfypsdiavewesngqpennykttppvldsdgsfflyskltvdks
rwqqgnvfscsvmhealhnhytqkslslspgk

    Sequence, based on observed residues (ATOM records): (download) 
    >1oqxB (B:)
ggpsvflfppkpkdtlmisrtpevtcvvvdvshedpevkfnwyvdgvevhnaktkpreeq
ynstyrvvsvltvlhqdwlngkeykckvsnkalpapiektiskakgqprepqvytlppsr
deltknqvsltclvkgfypsdiavewesngqpennykttppvldsdgsfflyskltvdks
rwqqgnvfscsvmhealhnhytqkslsls

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1oqxC (C:)
fnmqcqrrfyealhdpnlneeqrnakiksirddc

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1oqxD (D:)
fnmqcqrrfyealhdpnlneeqrnakiksirddc