PDB entry 1oqo
View 1oqo on RCSB PDB site
Description: Complex between G0 version of an Fc bound to a minimized version of Protein A called Mini-Z
Class: immune system
Keywords: Antibody, Glycosylation, Oligosaccharides, IgG, Fc Fragment, Z34C, Protein A
Deposited on
2003-03-10, released
2003-03-20
The last revision prior to the SCOP 1.73 freeze date was dated
2003-03-20, with a file datestamp of
2007-06-04.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.216
AEROSPACI score: 0.32
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: immunoglobulin gamma-1 heavy chain constant region
Species: HOMO SAPIENS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1oqoa1, d1oqoa2 - Chain 'B':
Compound: immunoglobulin gamma-1 heavy chain constant region
Species: HOMO SAPIENS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1oqob1, d1oqob2 - Chain 'C':
Compound: Minimized version of Protein A (Z34C)
Species: synthetic, synthetic
Domains in SCOP 1.73: d1oqoc_ - Chain 'D':
Compound: Minimized version of Protein A (Z34C)
Species: synthetic, synthetic
Domains in SCOP 1.73: d1oqod_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1oqoA (A:)
ggpsvflfppkpkdtlmisrtpevtcvvvdvshedpevkfnwyvdgvevhnaktkpreeq
ynstyrvvsvltvlhqdwlngkeykckvsnkalpapiektiskakgqprepqvytlppsr
deltknqvsltclvkgfypsdiavewesngqpennykttppvldsdgsfflyskltvdks
rwqqgnvfscsvmhealhnhytqkslslspgk
Sequence, based on observed residues (ATOM records): (download)
>1oqoA (A:)
gpsvflfppkpkdtlmisrtpevtcvvvdvshedpevkfnwyvdgvevhnaktkpreeqy
nstyrvvsvltvlhqdwlngkeykckvsnkalpapiektiskakgqprepqvytlppsrd
eltknqvsltclvkgfypsdiavewesngqpennykttppvldsdgsfflyskltvdksr
wqqgnvfscsvmhealhnhytqkslsls
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1oqoB (B:)
ggpsvflfppkpkdtlmisrtpevtcvvvdvshedpevkfnwyvdgvevhnaktkpreeq
ynstyrvvsvltvlhqdwlngkeykckvsnkalpapiektiskakgqprepqvytlppsr
deltknqvsltclvkgfypsdiavewesngqpennykttppvldsdgsfflyskltvdks
rwqqgnvfscsvmhealhnhytqkslslspgk
Sequence, based on observed residues (ATOM records): (download)
>1oqoB (B:)
ggpsvflfppkpkdtlmisrtpevtcvvvdvshedpevkfnwyvdgvevhnaktkpreeq
ynstyrvvsvltvlhqdwlngkeykckvsnkalpapiektiskakgqprepqvytlppsr
deltknqvsltclvkgfypsdiavewesngqpennykttppvldsdgsfflyskltvdks
rwqqgnvfscsvmhealhnhytqkslsl
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>1oqoC (C:)
fnmqcqrrfyealhdpnlneeqrnakiksirddc
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>1oqoD (D:)
fnmqcqrrfyealhdpnlneeqrnakiksirddc