PDB entry 1olz

View 1olz on RCSB PDB site
Description: the ligand-binding face of the semaphorins revealed by the high resolution crystal structure of sema4d
Class: developmental protein
Keywords: developmental protein, cd100, semaphorin, beta-propeller, psi domain, ig-like domain, extracellular receptor, neurogenesis, glycoprotein developmental protein, structural proteomics in europe, spine, structural genomics
Deposited on 2003-08-19, released 2003-09-11
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.206
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: semaphorin 4d
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1olza1, d1olza2, d1olza3
  • Chain 'B':
    Compound: semaphorin 4d
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1olzb1, d1olzb2, d1olzb3
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1olzA (A:)
mafapipritwehrevhlvqfhepdiynysalllsedkdtlyigareavfavnalnisek
qhevywkvsedkkakcaekgkskqteclnyirvlqplsatslyvcgtnafqpacdhlnlt
sfkflgknedgkgrcpfdpahsytsvmvdgelysgtsynflgsepiisrnsshsplrtey
aipwlnepsfvfadvirkspdspdgeddrvyffftevsveyefvfrvlipriarvckgdq
gglrtlqkkwtsflkarlicsrpdsglvfnvlrdvfvlrspglkvpvfyalftpqlnnvg
lsavcaynlstaeevfshgkymqsttveqshtkwvryngpvpkprpgacidsearaanyt
sslnlpdktlqfvkdhplmddsvtpidnrprlikkdvnytqivvdrtqaldgtvydvmfv
stdrgalhkaislehavhiieetqlfqdfepvqtlllsskkgnrfvyagsnsgvvqapla
fcgkhgtcedcvlardpycawspptatcvalhqtespsrgliqemsgdasvcpdkskgsy
rqhffkhggtaelkcsqksnlarvfwkfqngvlkaespkyglmgrknllifnlsegdsgv
yqclseervknktvfqvvakhvlevkvvpkpvvaptlsvvqtegsriatkvlvastkhhh
hhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1olzA (A:)
fapipritwehrevhlvqfhepdiynysalllsedkdtlyigareavfavnalnisekqh
evywkvsedkkakcaekgkskqteclnyirvlqplsatslyvcgtnafqpacdhlnltsf
kflgknedgkgrcpfdpahsytsvmvdgelysgtsynflgsepiisrnsshsplrteyai
pwlnepsfvfadvirkspgeddrvyffftevsveyefvfrvlipriarvckgdqgglrtl
qkkwtsflkarlicsrpdsglvfnvlrdvfvlrspglkvpvfyalftpqlnnvglsavca
ynlstaeevfshgkymqsttveqshtkwvryngpvpkprpgacidsearaanytsslnlp
dktlqfvkdhplmddsvtpidnrprlikkdvnytqivvdrtqaldgtvydvmfvstdrga
lhkaislehavhiieetqlfqdfepvqtlllsskkgnrfvyagsnsgvvqaplafcgkhg
tcedcvlardpycawspptatcvalhqtespsrgliqemsgdasvcpdkskgsyrqhffk
hggtaelkcsqksnlarvfwkfqngvlkaespkyglmgrknllifnlsegdsgvyqclse
ervknktvfqvvakhvlevkvv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1olzB (B:)
mafapipritwehrevhlvqfhepdiynysalllsedkdtlyigareavfavnalnisek
qhevywkvsedkkakcaekgkskqteclnyirvlqplsatslyvcgtnafqpacdhlnlt
sfkflgknedgkgrcpfdpahsytsvmvdgelysgtsynflgsepiisrnsshsplrtey
aipwlnepsfvfadvirkspdspdgeddrvyffftevsveyefvfrvlipriarvckgdq
gglrtlqkkwtsflkarlicsrpdsglvfnvlrdvfvlrspglkvpvfyalftpqlnnvg
lsavcaynlstaeevfshgkymqsttveqshtkwvryngpvpkprpgacidsearaanyt
sslnlpdktlqfvkdhplmddsvtpidnrprlikkdvnytqivvdrtqaldgtvydvmfv
stdrgalhkaislehavhiieetqlfqdfepvqtlllsskkgnrfvyagsnsgvvqapla
fcgkhgtcedcvlardpycawspptatcvalhqtespsrgliqemsgdasvcpdkskgsy
rqhffkhggtaelkcsqksnlarvfwkfqngvlkaespkyglmgrknllifnlsegdsgv
yqclseervknktvfqvvakhvlevkvvpkpvvaptlsvvqtegsriatkvlvastkhhh
hhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1olzB (B:)
fapipritwehrevhlvqfhepdiynysalllsedkdtlyigareavfavnalnisekqh
evywkvsedkkakcaekgkskqteclnyirvlqplsatslyvcgtnafqpacdhlnltsf
kflgknedgkgrcpfdpahsytsvmvdgelysgtsynflgsepiisrnsshsplrteyai
pwlnepsfvfadvirkspgeddrvyffftevsveyefvfrvlipriarvckgdqgglrtl
qkkwtsflkarlicsrpdsglvfnvlrdvfvlrspglkvpvfyalftpqlnnvglsavca
ynlstaeevfshgkymqsttveqshtkwvryngpvpkprpgacidsearaanytsslnlp
dktlqfvkdhplmddsvtpidnrprlikkdvnytqivvdrtqaldgtvydvmfvstdrga
lhkaislehavhiieetqlfqdfepvqtlllsskkgnrfvyagsnsgvvqaplafcgkhg
tcedcvlardpycawspptatcvalhqtespsrgliqemsgdasvcpdkskgsyrqhffk
hggtaelkcsqksnlarvfwkfqngvlkaespkyglmgrknllifnlsegdsgvyqclse
ervknktvfqvvakhvlevkvv