PDB entry 1ofe

View 1ofe on RCSB PDB site
Description: glutamate synthase from synechocystis sp in complex with 2-oxoglutarate and l-don at 2.45 angstrom resolution
Class: oxedoreductase
Keywords: complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur, fad, fmn, fd-gogat, oxidoreductase
Deposited on 2003-04-14, released 2003-06-11
The last revision prior to the SCOP 1.75 freeze date was dated 2003-06-11, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: 0.209
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ferredoxin-dependent glutamate synthase 2
    Species: Synechocystis sp.
    Database cross-references and differences (RAF-indexed):
    • Uniprot P55038 (0-End)
      • conflict (577)
      • conflict (580)
      • conflict (1506)
    Domains in SCOP 1.75: d1ofea1, d1ofea2, d1ofea3
  • Chain 'B':
    Compound: ferredoxin-dependent glutamate synthase 2
    Species: Synechocystis sp.
    Database cross-references and differences (RAF-indexed):
    • Uniprot P55038 (0-End)
      • conflict (577)
      • conflict (580)
      • conflict (1506)
    Domains in SCOP 1.75: d1ofeb1, d1ofeb2, d1ofeb3
  • Heterogens: F3S, FMN, AKG, ONL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1ofeA (A:)
    cgvgfianlrgkpdhtlveqalkalgcmehrggcsadndsgdgagvmtaiprellaqwfn
    trnlpmpdgdrlgvgmvflpqepsarevarayveevvrlekltvlgwrevpvnsdvlgiq
    aknnqphieqilvtcpegcagdeldrrlyiarsiigkklaedfyvcsfscrtivykgmvr
    siilgefyldlknpgytsnfavyhrrfstntmpkwplaqpmrllghngeintllgninwm
    aarekelevsgwtkaelealtpivnqansdsynldsalellvrtgrspleaamilvpeay
    knqpalkdypeisdfhdyysglqepwdgpallvfsdgkivgagldrnglrparycitkdd
    yivlgseagvvdlpevdivekgrlapgqmiavdlaeqkilknyqikqqaaqkypygewik
    iqrqtvasdsfaektlfndaqtvlqqqaafgytaedvemvvvpmasqgkeptfcmgddtp
    lavlshkprllydyfkqrfaqvtnppidplrenlvmslamflgkrgnllepkaesartik
    lrsplvnevelqaiktgqlqvaevstlydldgvnsledaltnlvktaiatvqagaeilvl
    tdrpngailtenqsfippllavgavhhhliraglrlkaslivdtaqcwsthhfaclvgyg
    asaicpylalesvrqwwldektqklmengrldridlptalknyrqsveaglfkilskmgi
    sllasyhgaqifeaiglgaelveyafagttsrvggltiadvagevmvfhgmafpemakkl
    enfgfvnyrpggeyhmnspemskslhkavaaykvggngnngeaydhyelyrqylkdrpvt
    alrdlldfnadqpaisleevesvesivkrfctggmslgalsreahetlaiamnrlgaksn
    sgeggedvvryltlddvdsegnsptlphlhglqngdtansaikqiasgrfgvtpeylmsg
    kqleikmaqgakpgeggqlpgkkvseyiamlrrskpgvtlisppphhdiysiedlaqliy
    dlhqinpeaqvsvklvaeigigtiaagvakanadiiqisghdggtgasplssikhagspw
    elgvtevhrvlmenqlrdrvllradgglktgwdvvmaalmgaeeygfgsiamiaegcima
    rvchtnncpvgvatqqerlrqrfkgvpgqvvnffyfiaeevrsllahlgyrslddiigrt
    dllkvrsdvqlsktqnltldcllnlpdtkqnrqwlnhepvhsngpvldddiladpdiqea
    inhqttatktyrlvntdrtvgtrlsgaiakkygnngfegnitlnfqgaagqsfgafnldg
    mtlhlqgeandyvgkgmnggeivivphpqasfapednviigntclygatggnlyangrag
    erfavrnsvgkaviegagdhcceymtggvivvlgpvgrnvgagmtgglayfldevgdlpe
    kinpeiitlqritaskgeeqlkslitahvehtgspkgkailanwsdylgkfwqavppsek
    dspeanndvsltgektltsv
    

    Sequence, based on observed residues (ATOM records): (download)
    >1ofeA (A:)
    cgvgfianlrgkpdhtlveqalkalgcmehrggcsadndsgdgagvmtaiprellaqwfn
    trnlpmpdgdrlgvgmvflpqepsarevarayveevvrlekltvlgwrevpvnsdvlgiq
    aknnqphieqilvtcpegcagdeldrrlyiarsiigkklaedfyvcsfscrtivykgmvr
    siilgefyldlknpgytsnfavyhrrfstntmpkwplaqpmrllghngeintllgninwm
    aarekelevsgwtkaelealtpivnqansdsynldsalellvrtgrspleaamilvpeay
    knqpalkdypeisdfhdyysglqepwdgpallvfsdgkivgagldrnglrparycitkdd
    yivlgseagvvdlpevdivekgrlapgqmiavdlaeqkilknyqikqqaaqkypygewik
    iqrqtvasdsfaektlfndaqtvlqqqaafgytaedvemvvvpmasqgkeptfcmgddtp
    lavlshkprllydyfkqrfaqvtnppidplrenlvmslamflgkrgnllepkaesartik
    lrsplvnevelqaiktgqlqvaevstlydnsledaltnlvktaiatvqagaeilvltdrp
    ngailtenqsfippllavgavhhhliraglrlkaslivdtaqcwsthhfaclvgygasai
    cpylalesvrqwwldektqklmengrlidlptalknyrqsveaglfkilskmgisllasy
    hgaqifeaiglgaelveyafagttsrvggltiadvagevmvfhgmafkklenfgfvnyrp
    ggeyhmnspemskslhkavaaydhyelyrqylkdrpvtalrdlldfnadqpaisleeves
    vesivkrfctggmslgalsreahetlaiamnrlgaksnsgeggedvvryltlddvdsegn
    sptlphlhglqngdtansaikqiasgrfgvtpeylmsgkqleikmaqgakpgeggqlpgk
    kvseyiamlrrskpgvtlisppphhdiysiedlaqliydlhqinpeaqvsvklvaeigig
    tiaagvakanadiiqisghdggtgasplssikhagspwelgvtevhrvlmenqlrdrvll
    radgglktgwdvvmaalmgaeeygfgsiamiaegcimarvchtnncpvgvatqqerlrqr
    fkgvpgqvvnffyfiaeevrsllahlgyrslddiigrtdllkvrsdvqlsktqnltldcl
    lnlpdtkqnrqwlnhepvhsngpvldddiladpdiqeainhqttatktyrlvntdrtvgt
    rlsgaiakkygnngfegnitlnfqgaagqsfgafnldgmtlhlqgeandyvgkgmnggei
    vivphpqasfapednviigntclygatggnlyangragerfavrnsvgkaviegagdhcc
    eymtggvivvlgpvgrnvgagmtgglayfldevgdlpekinpeiitlqritaskgeeqlk
    slitahvehtgspkgkailanwsdylgkfwqavppsekdspeann
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1ofeB (B:)
    cgvgfianlrgkpdhtlveqalkalgcmehrggcsadndsgdgagvmtaiprellaqwfn
    trnlpmpdgdrlgvgmvflpqepsarevarayveevvrlekltvlgwrevpvnsdvlgiq
    aknnqphieqilvtcpegcagdeldrrlyiarsiigkklaedfyvcsfscrtivykgmvr
    siilgefyldlknpgytsnfavyhrrfstntmpkwplaqpmrllghngeintllgninwm
    aarekelevsgwtkaelealtpivnqansdsynldsalellvrtgrspleaamilvpeay
    knqpalkdypeisdfhdyysglqepwdgpallvfsdgkivgagldrnglrparycitkdd
    yivlgseagvvdlpevdivekgrlapgqmiavdlaeqkilknyqikqqaaqkypygewik
    iqrqtvasdsfaektlfndaqtvlqqqaafgytaedvemvvvpmasqgkeptfcmgddtp
    lavlshkprllydyfkqrfaqvtnppidplrenlvmslamflgkrgnllepkaesartik
    lrsplvnevelqaiktgqlqvaevstlydldgvnsledaltnlvktaiatvqagaeilvl
    tdrpngailtenqsfippllavgavhhhliraglrlkaslivdtaqcwsthhfaclvgyg
    asaicpylalesvrqwwldektqklmengrldridlptalknyrqsveaglfkilskmgi
    sllasyhgaqifeaiglgaelveyafagttsrvggltiadvagevmvfhgmafpemakkl
    enfgfvnyrpggeyhmnspemskslhkavaaykvggngnngeaydhyelyrqylkdrpvt
    alrdlldfnadqpaisleevesvesivkrfctggmslgalsreahetlaiamnrlgaksn
    sgeggedvvryltlddvdsegnsptlphlhglqngdtansaikqiasgrfgvtpeylmsg
    kqleikmaqgakpgeggqlpgkkvseyiamlrrskpgvtlisppphhdiysiedlaqliy
    dlhqinpeaqvsvklvaeigigtiaagvakanadiiqisghdggtgasplssikhagspw
    elgvtevhrvlmenqlrdrvllradgglktgwdvvmaalmgaeeygfgsiamiaegcima
    rvchtnncpvgvatqqerlrqrfkgvpgqvvnffyfiaeevrsllahlgyrslddiigrt
    dllkvrsdvqlsktqnltldcllnlpdtkqnrqwlnhepvhsngpvldddiladpdiqea
    inhqttatktyrlvntdrtvgtrlsgaiakkygnngfegnitlnfqgaagqsfgafnldg
    mtlhlqgeandyvgkgmnggeivivphpqasfapednviigntclygatggnlyangrag
    erfavrnsvgkaviegagdhcceymtggvivvlgpvgrnvgagmtgglayfldevgdlpe
    kinpeiitlqritaskgeeqlkslitahvehtgspkgkailanwsdylgkfwqavppsek
    dspeanndvsltgektltsv
    

    Sequence, based on observed residues (ATOM records): (download)
    >1ofeB (B:)
    cgvgfianlrgkpdhtlveqalkalgcmehrggcsadndsgdgagvmtaiprellaqwfn
    trnlpmpdgdrlgvgmvflpqepsarevarayveevvrlekltvlgwrevpvnsdvlgiq
    aknnqphieqilvtcpegcagdeldrrlyiarsiigkklaedfyvcsfscrtivykgmvr
    siilgefyldlknpgytsnfavyhrrfstntmpkwplaqpmrllghngeintllgninwm
    aarekelevsgwtkaelealtpivnqansdsynldsalellvrtgrspleaamilvpeay
    knqpalkdypeisdfhdyysglqepwdgpallvfsdgkivgagldrnglrparycitkdd
    yivlgseagvvdlpevdivekgrlapgqmiavdlaeqkilknyqikqqaaqkypygewik
    iqrqtvasdsfaektlfndaqtvlqqqaafgytaedvemvvvpmasqgkeptfcmgddtp
    lavlshkprllydyfkqrfaqvtnppidplrenlvmslamflgkrgnllepkaesartik
    lrsplvnevelqaiktgqlqvaevstlydnsledaltnlvktaiatvqagaeilvltdrp
    ngailtenqsfippllavgavhhhliraglrlkaslivdtaqcwsthhfaclvgygasai
    cpylalesvrqwwldektqklmengrlidlptalknyrqsveaglfkilskmgisllasy
    hgaqifeaiglgaelveyafagttsrvggltiadvagevmvfhgmafkklenfgfvnyrp
    ggeyhmnspemskslhkavaaydhyelyrqylkdrpvtalrdlldfnadqpaisleeves
    vesivkrfctggmslgalsreahetlaiamnrlgaksnsgeggedvvryltlddvdsegn
    sptlphlhglqngdtansaikqiasgrfgvtpeylmsgkqleikmaqgakpgeggqlpgk
    kvseyiamlrrskpgvtlisppphhdiysiedlaqliydlhqinpeaqvsvklvaeigig
    tiaagvakanadiiqisghdggtgasplssikhagspwelgvtevhrvlmenqlrdrvll
    radgglktgwdvvmaalmgaeeygfgsiamiaegcimarvchtnncpvgvatqqerlrqr
    fkgvpgqvvnffyfiaeevrsllahlgyrslddiigrtdllkvrsdvqlsktqnltldcl
    lnlpdtkqnrqwlnhepvhsngpvldddiladpdiqeainhqttatktyrlvntdrtvgt
    rlsgaiakkygnngfegnitlnfqgaagqsfgafnldgmtlhlqgeandyvgkgmnggei
    vivphpqasfapednviigntclygatggnlyangragerfavrnsvgkaviegagdhcc
    eymtggvivvlgpvgrnvgagmtgglayfldevgdlpekinpeiitlqritaskgeeqlk
    slitahvehtgspkgkailanwsdylgkfwqavppsekdspeann