PDB entry 1od5

View 1od5 on RCSB PDB site
Description: crystal structure of glycinin a3b4 subunit homohexamer
Class: globulin
Keywords: glycinin, soybean, globulin, 11s,seed storage protein
Deposited on 2003-02-13, released 2003-06-02
The last revision prior to the SCOP 1.75 freeze date was dated 2003-06-02, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.201
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glycinin
    Species: Glycine max
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1od5a1, d1od5a2
  • Chain 'B':
    Compound: glycinin
    Species: Glycine max
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1od5b1, d1od5b2
  • Heterogens: CO3, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1od5A (A:)
tsskfnecqlnnlnalepdhrvesegglietwnsqhpelqcagvtvskrtlnrnglhlps
yspypqmiivvqgkgaigfafpgcpetfekpqqqssrrgsrsqqqlqdshqkirhfnegd
vlvippgvpywtyntgdepvvaislldtsnfnnqldqnprvfylagnpdiehpetmqqqq
qqkshggrkqgqhqqqeeeggsvlsgfskhflaqsfntnedtaeklrspdderkqivtve
gglsvispkwqeqededededeeyeqtpsypprrpshgkheddededeeedqprpdhppq
rpsrpeqqeprgrgcqtrngveenictmklheniarpsradfynpkagristlnsltlpa
lrqfglsaqyvvlyrngiysphwnlnansviyvtrgkgrvrvvncqgnavfdgelrrgql
lvvpqnfvvaeqggeqgleyvvfkthhnavssyikdvfraipsevlsnsynlgqsqvrql
kyqgnsgplvnp

    Sequence, based on observed residues (ATOM records): (download) 
    >1od5A (A:)
necqlnnlnalepdhrvesegglietwnsqhpelqcagvtvskrtlnrnglhlpsyspyp
qmiivvqgkgaigfafpgcpetfekpqdshqkirhfnegdvlvippgvpywtyntgdepv
vaislldtsnfnnqldqnprvfylagnpdiehpetmqeggsvlsgfskhflaqsfntned
taeklrspdderkqivtvegglsvispkwgveenictmklheniarpsradfynpkagri
stlnsltlpalrqfglsaqyvvlyrngiysphwnlnansviyvtrgkgrvrvvncqgnav
fdgelrrgqllvvpqnfvvaeqggeqgleyvvfkthhnavssyikdvfraipsevlsnsy
nlgqsqvrqlkyqgnsgplvnp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1od5B (B:)
tsskfnecqlnnlnalepdhrvesegglietwnsqhpelqcagvtvskrtlnrnglhlps
yspypqmiivvqgkgaigfafpgcpetfekpqqqssrrgsrsqqqlqdshqkirhfnegd
vlvippgvpywtyntgdepvvaislldtsnfnnqldqnprvfylagnpdiehpetmqqqq
qqkshggrkqgqhqqqeeeggsvlsgfskhflaqsfntnedtaeklrspdderkqivtve
gglsvispkwqeqededededeeyeqtpsypprrpshgkheddededeeedqprpdhppq
rpsrpeqqeprgrgcqtrngveenictmklheniarpsradfynpkagristlnsltlpa
lrqfglsaqyvvlyrngiysphwnlnansviyvtrgkgrvrvvncqgnavfdgelrrgql
lvvpqnfvvaeqggeqgleyvvfkthhnavssyikdvfraipsevlsnsynlgqsqvrql
kyqgnsgplvnp

    Sequence, based on observed residues (ATOM records): (download) 
    >1od5B (B:)
necqlnnlnalepdhrvesegglietwnsqhpelqcagvtvskrtlnrnglhlpsyspyp
qmiivvqgkgaigfafpgcpetfekpqdshqkirhfnegdvlvippgvpywtyntgdepv
vaislldtsnfnnqldqnprvfylagnpdiehpetmqeggsvlsgfskhflaqsfntned
taeklrspdderkqivtvegglsvispkwgveenictmklheniarpsradfynpkagri
stlnsltlpalrqfglsaqyvvlyrngiysphwnlnansviyvtrgkgrvrvvncqgnav
fdgelrrgqllvvpqnfvvaeqggeqgleyvvfkthhnavssyikdvfraipsevlsnsy
nlgqsqvrqlkyqgnsgplvnp