PDB entry 1ntg
View 1ntg on RCSB PDB site
Description: Crystal Structure of the EMAP II-like Cytokine Released from human tyrosyl-tRNA Synthetase
Class: ligase
Keywords: beta barrel, LIGASE
Deposited on
2003-01-29, released
2003-05-13
The last revision prior to the SCOPe 2.05 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.21 Å
R-factor: 0.251
AEROSPACI score: 0.32
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Tyrosyl-tRNA synthetase
Species: Homo sapiens [TaxId:9606]
Gene: YARS
Database cross-references and differences (RAF-indexed):
- Uniprot P54577 (Start-169)
- cloning artifact (170-171)
Domains in SCOPe 2.05: d1ntga_ - Chain 'B':
Compound: Tyrosyl-tRNA synthetase
Species: Homo sapiens [TaxId:9606]
Gene: YARS
Database cross-references and differences (RAF-indexed):
- Uniprot P54577 (Start-169)
- cloning artifact (170-171)
Domains in SCOPe 2.05: d1ntgb_ - Chain 'C':
Compound: Tyrosyl-tRNA synthetase
Species: Homo sapiens [TaxId:9606]
Gene: YARS
Database cross-references and differences (RAF-indexed):
- Uniprot P54577 (Start-169)
- cloning artifact (170-171)
Domains in SCOPe 2.05: d1ntgc_ - Chain 'D':
Compound: Tyrosyl-tRNA synthetase
Species: Homo sapiens [TaxId:9606]
Gene: YARS
Database cross-references and differences (RAF-indexed):
- Uniprot P54577 (Start-169)
- cloning artifact (170-171)
Domains in SCOPe 2.05: d1ntgd_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1ntgA (A:)
epeevipsrldirvgkiitvekhpdadslyvekidvgeaeprtvvsglvqfvpkeelqdr
lvvvlcnlkpqkmrgvesqgmllcasieginrqvepldppagsapgehvfvkgyekgqpd
eelkpkkkvfeklqadfkiseeciaqwkqtnfmtklgsisckslkggnisle
Sequence, based on observed residues (ATOM records): (download)
>1ntgA (A:)
peevipsrldirvgkiitvekhpdadslyvekidvgeaeprtvvsglvqfvpkeelqdrl
vvvlcnlkpqkmrgvesqgmllcasieginrqvepldppagsapgehvfvkgyekgqpde
elkpkkkvfeklqadfkiseeciaqwkqtnfmtklgsisckslkggnisle
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1ntgB (B:)
epeevipsrldirvgkiitvekhpdadslyvekidvgeaeprtvvsglvqfvpkeelqdr
lvvvlcnlkpqkmrgvesqgmllcasieginrqvepldppagsapgehvfvkgyekgqpd
eelkpkkkvfeklqadfkiseeciaqwkqtnfmtklgsisckslkggnisle
Sequence, based on observed residues (ATOM records): (download)
>1ntgB (B:)
peevipsrldirvgkiitvekhpdadslyvekidvgeaeprtvvsglvqfvpkeelqdrl
vvvlcnlkpqkmrgvesqgmllcasieginrqvepldppagsapgehvfvkgyekgqpde
elkpkkkvfeklqadfkiseeciaqwkqtnfmtklgsisckslkggnisle
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1ntgC (C:)
epeevipsrldirvgkiitvekhpdadslyvekidvgeaeprtvvsglvqfvpkeelqdr
lvvvlcnlkpqkmrgvesqgmllcasieginrqvepldppagsapgehvfvkgyekgqpd
eelkpkkkvfeklqadfkiseeciaqwkqtnfmtklgsisckslkggnisle
Sequence, based on observed residues (ATOM records): (download)
>1ntgC (C:)
peevipsrldirvgkiitvekhpdadslyvekidvgeaeprtvvsglvqfvpkeelqdrl
vvvlcnlkpqkmrgvesqgmllcasieginrqvepldppagsapgehvfvkgyekgqpde
elkpkkkvfeklqadfkiseeciaqwkqtnfmtklgsisckslkggnisle
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1ntgD (D:)
epeevipsrldirvgkiitvekhpdadslyvekidvgeaeprtvvsglvqfvpkeelqdr
lvvvlcnlkpqkmrgvesqgmllcasieginrqvepldppagsapgehvfvkgyekgqpd
eelkpkkkvfeklqadfkiseeciaqwkqtnfmtklgsisckslkggnisle
Sequence, based on observed residues (ATOM records): (download)
>1ntgD (D:)
peevipsrldirvgkiitvekhpdadslyvekidvgeaeprtvvsglvqfvpkeelqdrl
vvvlcnlkpqkmrgvesqgmllcasieginrqvepldppagsapgehvfvkgyekgqpde
elkpkkkvfeklqadfkiseeciaqwkqtnfmtklgsisckslkggnisle