PDB entry 1nl0
View 1nl0 on RCSB PDB site
Description: Crystal structure of human factor IX Gla domain in complex of an inhibitory antibody, 10C12
Class: immune system
Keywords: immune system, antibody, gla domain
Deposited on
2003-01-06, released
2004-01-20
The last revision prior to the SCOPe 2.05 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.233
AEROSPACI score: 0.36
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'G':
Compound: factor ix
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Uniprot P00740 (0-44)
- modified residue (6-7)
- modified residue (14)
- modified residue (16)
- modified residue (19-20)
- modified residue (25-26)
- modified residue (29)
- modified residue (32)
- modified residue (35)
- modified residue (39)
Domains in SCOPe 2.05: d1nl0g_ - Chain 'H':
Compound: anti-factor IX antibody, 10C12, chain H
Species: Homo sapiens [TaxId:9606]
Gene: 10C12
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d1nl0h1, d1nl0h2 - Chain 'L':
Compound: anti-factor IX antibody, 10C12, chain L
Species: Homo sapiens [TaxId:9606]
Gene: 10C12
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d1nl0l1, d1nl0l2 - Heterogens: CA, SO4, HOH
PDB Chain Sequences:
- Chain 'G':
Sequence, based on SEQRES records: (download)
>1nl0G (G:)
ynsgkleefvqgnlerecmeekcsfeearevfenterttefwkqyeeeeee
Sequence, based on observed residues (ATOM records): (download)
>1nl0G (G:)
ynsgkleefvqgnlerecmeekcsfeearevfenterttefwkqy
- Chain 'H':
Sequence, based on SEQRES records: (download)
>1nl0H (H:)
gvqlvesgggvvqpgrslrlscaasgftfstyamhwvrqapgkglewvaiisydgskkyy
adsvkgrftisrdnskntlylqmnslraedtavyycarasiaaarvldywgrgtmvtvss
astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
glyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscd
Sequence, based on observed residues (ATOM records): (download)
>1nl0H (H:)
gvqlvesgggvvqpgrslrlscaasgftfstyamhwvrqapgkglewvaiisydgskkyy
adsvkgrftisrdnskntlylqmnslraedtavyycarasiaaarvldywgrgtmvtvss
astkgpsvfplaptaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglyslssv
vtvpssslgtqtyicnvnhkpsntkvdkkvepkscd
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>1nl0L (L:)
qsvltqppsvsaapgqkvtiscsgstsnignnyvswyqqhpgkapklmiydvskrpsgvp
drfsgsksgnsasldisglqsedeadyycaawddslseflfgtgtkltvlgqpkaapsvt
lfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaass
ylsltpeqwkshksyscqvthegstvektvapt