PDB entry 1njm
View 1njm on RCSB PDB site
Description: The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin
Class: ribosome
Keywords: Ribosomes, tRNA, puromycin, sparsomycin, peptidyl-transferase, peptide bond formation
Deposited on
2003-01-02, released
2003-02-11
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 3.6 Å
R-factor: 0.284
AEROSPACI score: -0.01
(click here for full SPACI score report)
Chains and heterogens:
- Chain '0':
Compound: 23S ribosomal RNA
Species: Deinococcus radiodurans [TaxId:1299]
- Chain '5':
Compound: tRNA acceptor stem mimic
Species: synthetic, synthetic
- Chain 'K':
Compound: 50S ribosomal protein L16
Species: Deinococcus radiodurans [TaxId:1299]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1njmk_ - Chain 'T':
Compound: general stress protein ctc
Species: Deinococcus radiodurans [TaxId:1299]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1njmt_ - Heterogens: SPS
PDB Chain Sequences:
- Chain '0':
No sequence available.
- Chain '5':
No sequence available.
- Chain 'K':
Sequence, based on SEQRES records: (download)
>1njmK (K:)
mllpkrtkfrkqfrgrmtgdakggdyvafgdygliamepawiksnqieacrivmsrhfrr
ggkiyirifpdkpvtkkpaetrmgkgkgaveywvsvvkpgrvmfevagvteeqakeafrl
aghklpiqtkmvkrevydeaq
Sequence, based on observed residues (ATOM records): (download)
>1njmK (K:)
tkfrkqfrgrmtgdakggdyvafgdygliamepawiksnqieacrivmsrhfrrggkiyi
rifpdkpvtkkpaetrmgkgkgaveywvsvvkpgrvmfevagvteeqakeafrlaghklp
iqtk
- Chain 'T':
Sequence, based on SEQRES records: (download)
>1njmT (T:)
meltakprtpkqkldesmiaavaynkennvsfaldrkafdrafrqqsttglfditvegge
tfpalvkavqmdkrkrapihvdfymvtygepvevsvpvhttgrsqgevqgglvdivvhnl
qivapgprripqelvvdvtkmnigdhitagdiklpegctlaadpeltvvsvlpprltaee
leaevqaaqvaglvaagelseeaaeavlegdasleevkaeasednagtdsednsdaq
Sequence, based on observed residues (ATOM records): (download)
>1njmT (T:)
meltakprtpkqkldesmiaavaynkennvsfaldrkafdrafrqqsttglfditvegge
tfpalvkavqmdkrkrapihvdfymvtygepvevsvpvhttgrsqgevqgglvdivvhnl
qivapgprripqelvvdvtkmnigdhitagdiklpegctlaadpeltvvsvlpprltaee
leaevqaaqvaglvaagelseeaaeavlegdasleevkaease