PDB entry 1njj

View 1njj on RCSB PDB site
Description: Crystal structure determination of T. brucei ornithine decarboxylase bound to D-ornithine and to G418
Class: lyase
Keywords: ornithine decarboxylase, ODC, PLP, pyridoxal 5'-phosphate, D-ornithine, G418, LYASE
Deposited on 2002-12-31, released 2003-08-26
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: 0.26
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ornithine decarboxylase
    Species: Trypanosoma brucei gambiense [TaxId:31285]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1njja1, d1njja2
  • Chain 'B':
    Compound: ornithine decarboxylase
    Species: Trypanosoma brucei gambiense [TaxId:31285]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1njjb1, d1njjb2
  • Chain 'C':
    Compound: ornithine decarboxylase
    Species: Trypanosoma brucei gambiense [TaxId:31285]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1njjc1, d1njjc2
  • Chain 'D':
    Compound: ornithine decarboxylase
    Species: Trypanosoma brucei gambiense [TaxId:31285]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1njjd1, d1njjd2
  • Heterogens: GET, ORX, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1njjA (A:)
ksmdivvnddlscrflegfntrdalckkismntcdegdpffvadlgdivrkhetwkkclp
rvtpfyavkcnddwrvlgtlaalgtgfdcasnteiqrvrgigvppekiiyanpckqishi
ryardsgvdvmtfdcvdelekvakthpkakmvlristddslarcrlsvkfgakvedcrfi
leqakklnidvtgvsfhvgsgstdastfaqaisdsrfvfdmgtelgfnmhildigggfpg
trdaplkfeeiagvinnalekhfppdlkltivaepgryyvasaftlavnviakkvtpgvq
tdvgahaesnaqsfmyyvndgvygsfncilydhavvrplpqrepipneklypssvwgptc
dgldqiveryylpemqvgewllfedmgaytvvgtssfngfqsptiyyvvsglpdhvvrel
ksqks

    Sequence, based on observed residues (ATOM records): (download) 
    >1njjA (A:)
ntrdalckkgdpffvadlgdivrkhetwkkclprvtpfyavkcnddwrvlgtlaalgtgf
dcasnteiqrvrgigvppekiiyanpckqishiryardsgvdvmtfdcvdelekvakthp
kakmvlristvkfgakvedcrfileqakklnidvtgvsfhvgsgstdastfaqaisdsrf
vfdmgtelgfnmhildigggfpgtrdaplkfeeiagvinnalekhfppdlkltivaepgr
yyvasaftlavnviakkvtqsfmyyvndgvygsfncilydhavvrplpqrepeklypssv
wgptcdgldqiveryylpemqvgewllfedmgaytvsptiyyvvsglpd

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1njjB (B:)
ksmdivvnddlscrflegfntrdalckkismntcdegdpffvadlgdivrkhetwkkclp
rvtpfyavkcnddwrvlgtlaalgtgfdcasnteiqrvrgigvppekiiyanpckqishi
ryardsgvdvmtfdcvdelekvakthpkakmvlristddslarcrlsvkfgakvedcrfi
leqakklnidvtgvsfhvgsgstdastfaqaisdsrfvfdmgtelgfnmhildigggfpg
trdaplkfeeiagvinnalekhfppdlkltivaepgryyvasaftlavnviakkvtpgvq
tdvgahaesnaqsfmyyvndgvygsfncilydhavvrplpqrepipneklypssvwgptc
dgldqiveryylpemqvgewllfedmgaytvvgtssfngfqsptiyyvvsglpdhvvrel
ksqks

    Sequence, based on observed residues (ATOM records): (download) 
    >1njjB (B:)
ntrdalckkisgdpffvadlgdivrkhetwkkclprvtpfyavkcnddwrvlgtlaalgt
gfdcasnteiqrvrgigvppekiiyanpckqishiryardsgvdvmtfdcvdelekvakt
hpkakmvlristvkfgakvedcrfileqakklnidvtgvsfhvgsgstdastfaqaisds
rfvfdmgtelgfnmhildigggfpgtrdaplkfeeiagvinnalekhfppdlkltivaep
gryyvasaftlavnviakkvtqsfmyyvndgvygsfncilydhavvrplpqrepipnekl
ypssvwgptcdgldqiveryylpemqvgewllfedmgaytvsptiyyvv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1njjC (C:)
ksmdivvnddlscrflegfntrdalckkismntcdegdpffvadlgdivrkhetwkkclp
rvtpfyavkcnddwrvlgtlaalgtgfdcasnteiqrvrgigvppekiiyanpckqishi
ryardsgvdvmtfdcvdelekvakthpkakmvlristddslarcrlsvkfgakvedcrfi
leqakklnidvtgvsfhvgsgstdastfaqaisdsrfvfdmgtelgfnmhildigggfpg
trdaplkfeeiagvinnalekhfppdlkltivaepgryyvasaftlavnviakkvtpgvq
tdvgahaesnaqsfmyyvndgvygsfncilydhavvrplpqrepipneklypssvwgptc
dgldqiveryylpemqvgewllfedmgaytvvgtssfngfqsptiyyvvsglpdhvvrel
ksqks

    Sequence, based on observed residues (ATOM records): (download) 
    >1njjC (C:)
rflegfntrdalckkgdpffvadlgdivrkhetwkkclprvtpfyavkcnddwrvlgtla
algtgfdcasnteiqrvrgigvppekiiyanpckqishiryardsgvdvmtfdcvdelek
vakthpkakmvlristvkfgakvedcrfileqakklnidvtgvsfhvgsgstdastfaqa
isdsrfvfdmgtelgfnmhildigggfpgtrdaplkfeeiagvinnalekhfppdlklti
vaepgryyvasaftlavnviakkvtqsfmyyvndgvygsfncilydhavvrplpqrepie
klypssvwgptcdgldqiveryylpemqvgewllfedmgaytvvsptiyyvv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1njjD (D:)
ksmdivvnddlscrflegfntrdalckkismntcdegdpffvadlgdivrkhetwkkclp
rvtpfyavkcnddwrvlgtlaalgtgfdcasnteiqrvrgigvppekiiyanpckqishi
ryardsgvdvmtfdcvdelekvakthpkakmvlristddslarcrlsvkfgakvedcrfi
leqakklnidvtgvsfhvgsgstdastfaqaisdsrfvfdmgtelgfnmhildigggfpg
trdaplkfeeiagvinnalekhfppdlkltivaepgryyvasaftlavnviakkvtpgvq
tdvgahaesnaqsfmyyvndgvygsfncilydhavvrplpqrepipneklypssvwgptc
dgldqiveryylpemqvgewllfedmgaytvvgtssfngfqsptiyyvvsglpdhvvrel
ksqks

    Sequence, based on observed residues (ATOM records): (download) 
    >1njjD (D:)
ntrdalckkisgdpffvadlgdivrkhetwkkclprvtpfyavkcnddwrvlgtlaalgt
gfdcasnteiqrvrgigvppekiiyanpckqishiryardsgvdvmtfdcvdelekvakt
hpkakmvlristvkfgakvedcrfileqakklnidvtgvsfhvgsgstdastfaqaisds
rfvfdmgtelgfnmhildigggfpgtrdaplkfeeiagvinnalekhfppdlkltivaep
gryyvasaftlavnviakkvtsnaqsfmyyvndgvygsfncilydhavvrplpqrepipn
eklypssvwgptcdgldqiveryylpemqvgewllfedmgaytvfqsptiyyvv