PDB entry 1ndm
View 1ndm on RCSB PDB site
Description: Crystal structure of Fab fragment of antibody HyHEL-26 complexed with lysozyme
Class: immune system/hydrolase
Keywords: antibody; lysozyme; mutant; HyHEL-26
Deposited on
2002-12-09, released
2003-06-03
The last revision prior to the SCOP 1.73 freeze date was dated
2003-06-03, with a file datestamp of
2007-06-04.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.208
AEROSPACI score: 0.38
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: antibody kappa light chain
Species: MUS MUSCULUS
Database cross-references and differences (RAF-indexed):
- Uniprot P01837 (0-213)
- cloning artifact (0-1)
- cloning artifact (3)
Domains in SCOP 1.73: d1ndma1, d1ndma2 - Chain 'B':
Compound: immunoglobulin gamma 1 chain
Species: MUS MUSCULUS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1ndmb1, d1ndmb2 - Chain 'C':
Compound: Lysozyme C
Species: GALLUS GALLUS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1ndmc_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1ndmA (A:)
divltqspatlsvtpgdsvslscrasqsisnnlhwyqqkshesprllikyasqsisgips
rfsgsgsgtdftlsinsvetedfgmyfcqqsnswpytfgggtkleikradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnrnec
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1ndmB (B:)
evqlqesgpslvkpsqtlsltcsvtgdsitsdywswirkfpgnkleymgyisysgstyyh
pslksrisitrdtsknqyylqlnsvttedtatyycarwemdywgqgtsvtvssakttaps
vyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdlytlsss
vtvtsstwpsqsitcnvahpasstkvdkki
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>1ndmC (C:)
kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
qawirgcrl