PDB entry 1ndg

View 1ndg on RCSB PDB site
Description: Crystal structure of Fab fragment of antibody HyHEL-8 complexed with its antigen lysozyme
Class: immune system/hydrolase
Keywords: antibody; lysozyme; mutant; HyHEL-8
Deposited on 2002-12-09, released 2003-06-03
The last revision prior to the SCOP 1.73 freeze date was dated 2003-06-03, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.206
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: antibody kappa light chain
    Species: MUS MUSCULUS
    Gene:
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01837 (0-213)
      • cloning artifact (0-1)
      • cloning artifact (3)
    Domains in SCOP 1.73: d1ndga1, d1ndga2
  • Chain 'B':
    Compound: immunoglobulin gamma 1 chain
    Species: MUS MUSCULUS
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ndgb1, d1ndgb2
  • Chain 'C':
    Compound: Lysozyme C
    Species: GALLUS GALLUS
    Gene:
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00698 (0-128)
      • engineered (60)
    Domains in SCOP 1.73: d1ndgc_
  • Heterogens: ACY, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1ndgA (A:)
    divltqspatlsvtpgdsvslscrasqsisnnlhwyqqkshesprllikyasqsisgips
    rfsgsgsgtdftlsinsvetedfgmyfcqqsnswpytfgggtkleikradaaptvsifpp
    sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
    ltkdeyerhnsytceathktstspivksfnrnec
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1ndgB (B:)
    evqlqesgpslvkpsqtlsltcsvtgdsiirdywswirkfpgnkleymgyisfsgntfyh
    pslksrisitrdtsknqhylqlssvttedtatyycanwdgtywgegtlvtvsaakttaps
    vyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdlytlsss
    vtvtsstwpsqsitcnvahpasstavdkki
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1ndgC (C:)
    kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
    awwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
    qawirgcrl