PDB entry 1nd3

View 1nd3 on RCSB PDB site
Description: The structure of HRV16, when complexed with pleconaril, an antiviral compound
Class: Virus
Keywords: HRV16, rhinovirus, piconaviridae, pleconaril, Icosahedral virus
Deposited on 2002-12-06, released 2003-12-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.247
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: coat protein vp1
    Species: Human rhinovirus 16 [TaxId:31708]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1nd3a_
  • Chain 'B':
    Compound: coat protein vp2
    Species: Human rhinovirus 16 [TaxId:31708]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1nd3.1
  • Chain 'C':
    Compound: coat protein vp3
    Species: Human rhinovirus 16 [TaxId:31708]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1nd3c_
  • Chain 'D':
    Compound: coat protein vp4
    Species: Human rhinovirus 16 [TaxId:31708]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q82122 (0-End)
      • see remark 999 (23)
    Domains in SCOPe 2.08: d1nd3.1
  • Heterogens: ZN, W11, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1nd3A (A:)
npveryvdevlnevlvvpninqshpttsnaapvldaaetghtnkiqpedtietryvqssq
tldemsvesflgrsgcihesvldivdnyndqsftkwninlqemaqirrkfemftyarfds
eitmvpsvaakdghighivmqymyvppgapipttrddyawqsgtnasvfwqhgqpfprfs
lpflsiasayymfydgydgdtyksrygtvvtndmgtlcsrivtseqlhkvkvvtriyhka
khtkawcprppravqyshthttnyklssevhndvairprtnlttv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1nd3B (B:)
spsveacgysdriiqitrgdstitsqdvanavvgygvwphyltpqdataidkptqpdtss
nrfytldskmwnstskgwwwklpdalkdmgifgenmfyhflgrsgytvhvqcnaskfhqg
tllvvmipehqlatvnkgnvnagykythpgeagrevgtqvenekqpsddnwlnfdgtllg
nllifphqfinlrsnnsatlivpyvnavpmdsmvrhnnwslviipvcqlqsnnisnivpi
tvsispmcaefsgaraktvvq

    Sequence, based on observed residues (ATOM records): (download) 
    >1nd3B (B:)
sdriiqitrgdstitsqdvanavvgygvwphyltpqdataidkptqpdtssnrfytldsk
mwnstskgwwwklpdalkdmgifgenmfyhflgrsgytvhvqcnaskfhqgtllvvmipe
hqlatvnkgnvnagykythpgeagrevgtqvenekqpsddnwlnfdgtllgnllifphqf
inlrsnnsatlivpyvnavpmdsmvrhnnwslviipvcqlqsnnisnivpitvsispmca
efsgaraktvvq

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1nd3C (C:)
glpvyvtpgsgqfmttddmqspcalpwyhptkeifipgevknliemcqvdtlipinstqs
nignvsmytvtlspqtklaeeifaikvdiashplattligeiasyfthwtgslrfsfmfc
gtanttlkvllaytppgigkprsrkeamlgthvvwdvglqstvslvvpwisasqyrfttp
dtyssagyitcwyqtnfvvppntpntaemlcfvsgckdfclrmardtdlhkqtgpitq

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1nd3D (D:)
gaqvsrqnvgthstqnmvsngssinyfninyfkdaassgasrldfsqdpskftdpvkdvl
ekgiptlq

    Sequence, based on observed residues (ATOM records): (download) 
    >1nd3D (D:)
gaqvsrqsinyfninyfkdaassgasrld